Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59820 817 / 0 LETM1-like protein (.1.2) AT1G65540 804 / 0 LETM1-like protein (.1) AT4G37010 41 / 0.0008 CEN2 centrin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027069 [exp] 1309 / 0 AT3G59820 917 / 0.0 LETM1-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G142000 [exp] 896 / 0 AT3G59820 840 / 0.0 LETM1-like protein (.1.2) Potri.008G078600 [exp] 868 / 0 AT1G65540 915 / 0.0 LETM1-like protein (.1) Potri.010G178400 [exp] 862 / 0 AT1G65540 889 / 0.0 LETM1-like protein (.1) Potri.001G187100 [exp] 60 / 6e-09 AT5G06220 145 / 1e-35 LETM1-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07766 [flax] [poplar] LETM1 LETM1-like protein
Representative CDS sequence Show only first row Show all	>Lus10025602 pacid=23145074 polypeptide=Lus10025602 locus=Lus10025602.g ID=Lus10025602.BGIv1.0 annot-version=v1.0 ATGGCTTCTAGAGCAATTGTGAGGAGGAACAAATGCGTTTTTGATTACTTCAGTTCTTCTGCTCATTCCAGTTATAATCTCCGCAGTCTGAGGCTAGGAG TTCCAGGATTGGATTCTTGTGGCAATGGTTCTGATGCCAACTGTCAGTCTTCTGACCTTGCGAATGTGAAGGAACCAAATGAAGCTGCTGCTAGAAAACT AGAGCTGTTTGGTGTCTTGGGTGATGGGCACTTTAGGAATAGTTTCTATAGTAGGGCAGTTTTGGGCTCCAGAAATGTGAGAGCAGACTTCTTTCACCCG TTGAGATTGATGTCTACAGCTTCAGGTAATGCATCTACTGCCACAGCTAAACAGCCTGAGTTCGGAAATGATGATGACGGAAATGAAGAATCTGTAGCCA AGAAGAGAAAAGAAGTGTCTCCGGAAGACTGTGATGAAGCTGTTGAAGGCTTGAGTACTGCAAAGGCCAAAGCAAAAGCCAAAAAGTTACAAGAGTCTCA AACTGCTGTTAAATCAGTTTTACAGAAAACATGGGCTGTGCTTCTTGGAATCGGCCCGGCGTTAAGAGCTGTAGCTGCAATGAGCAGGGAAGATTGGGCC AATAAACTTACACACTTCAAAAAGGAAATTGTCTCCACTTTGAAGCATTATTGGTTGGGTTTTAAACTGTTGGGAGCTGATGTAAGGATCAGTGTAAGAT TGCTATTAAAACTTGCTGAAGGGAAGAGTCTGTCCAGAAGGGAGAGGCAACAGCTAACACGAACAACTGCAGACATTTTTCGTTTAGTTCCTTTCGCAGT TTTCATCATTGTTCCCTTCATGGAATTTCTGCTGCCTGTATTCCTGAAATTGTTCCCCAATATGCTGCCATCAACATTTCAAGACAAGATGAAAGAGCAG GAAGCATTGAAAAGGAAGCTAAATGCGAGAATAGAATATGCCAAGTTTCTTCAGGATACAGTAAAAGAAATGGCAAACGAAGTTCAAAACTCACGAAGTG GTGAAGCTAAGAGAACTGCAGAGGATCTTGATGAATTTTTGAACAAAGTTAGGAAAGGTTCTTCCGTTTCCAATGACGAGATTCTAAGCTTTGCCAAGCT ATTCAACGATGAGCTAACTTTAGATAATATCAGCAGGCCTCGGTTAGTCAGTATGTGCAAGTATATGGGGATCAGTCCTTTTGGAACTGATTCTTATCTT CGATTCATGCTCCGGAAAAGACTTCGAAGCATAAAAGCTGATGACAAGATGATTCAAGAAGAAGGCATCGAAACGCTTACAGAGGATGAACTTCGCGCAG AATGTAGAGAACGTGGAATGCTTGGGTTACTTTCAGTTGAAGAAATGAGGGAACAGCTCCGTGACTGGTTGGATCTCTCTCTCAATCACTCCGTCCCATC TTCTCTGTTAATCCTCTCAAGGGCTTTCACTGTATCTGGTAGAGTGAAACCAGAGGAAGCTGTTCGTGCAACACTATCATCTCTTCCCGACGAAGTTGTG GATACTCTTGCCAGTACTGGTTTGCCATCTGAAGATTCTGTTTCAGAAAGGAGAAGGAAGTTGGAGTTCTTACAGATGGAGGATGAACGTATCAAGGAAG AGGAAGAGAAAGAAGAGGAAGAACTTGCTAGGATTAAGGAACATAAAGCAAGCGAGGAGGAAGATGTGGCATTGAAAGAGATGACTACACCAACAGCAAG TGAAGCTCAAGAACGGGCCAGGGAACGAACACTGGAGAAACAGGATGAGCTTTGTGAACTCAGTCGTGCATTGGCTGTTTTAGCTTCTGCATCATCAGTG AGTAGAGAACGTGAACAGTTTCTGAGACTTGTCAACAAGGAGATAGAGCTTTATAACAGCATGATAGATAGCGAAGGCATCGAGGATGAGAAGGCGGCGA TGAAGGCTTATAGAGCGGCTAAAGACGAAAGTGGGCGTTCAGCTGAAGTGGAAAAGCAAGAAGAAGAGGAAGAAGACGCTGATGAAGTTTCTTCAGCACT TATTGATAGGGTTGACGCCATGCTCCAAAAGCTCGAGAAGGAGATTGATGACGTGGATGCTGAAATTGGGGACCGTTTCCGACTACTTGACAGGGATTCC GATGGGAAAGTGACACCAGACGAGGTGGCAGCAGCAGCTAACTATCTGAAGAACACGCTTGGAAAAGAAGGCATTCAGGAACTCATTAGCAATCTTGCCA AAGACTCAGATGGGAAGATTCGGGTGGAAGACATAGTGAAATTGGGTAGCCGGTTGGAAGATGAGTCGGGTGAGGGTGAAGAGGTGGGCGATGAACGAGC CAAGTGA
AA sequence Show only first row Show all	>Lus10025602 pacid=23145074 polypeptide=Lus10025602 locus=Lus10025602.g ID=Lus10025602.BGIv1.0 annot-version=v1.0 MASRAIVRRNKCVFDYFSSSAHSSYNLRSLRLGVPGLDSCGNGSDANCQSSDLANVKEPNEAAARKLELFGVLGDGHFRNSFYSRAVLGSRNVRADFFHP LRLMSTASGNASTATAKQPEFGNDDDGNEESVAKKRKEVSPEDCDEAVEGLSTAKAKAKAKKLQESQTAVKSVLQKTWAVLLGIGPALRAVAAMSREDWA NKLTHFKKEIVSTLKHYWLGFKLLGADVRISVRLLLKLAEGKSLSRRERQQLTRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEQ EALKRKLNARIEYAKFLQDTVKEMANEVQNSRSGEAKRTAEDLDEFLNKVRKGSSVSNDEILSFAKLFNDELTLDNISRPRLVSMCKYMGISPFGTDSYL RFMLRKRLRSIKADDKMIQEEGIETLTEDELRAECRERGMLGLLSVEEMREQLRDWLDLSLNHSVPSSLLILSRAFTVSGRVKPEEAVRATLSSLPDEVV DTLASTGLPSEDSVSERRRKLEFLQMEDERIKEEEEKEEEELARIKEHKASEEEDVALKEMTTPTASEAQERARERTLEKQDELCELSRALAVLASASSV SREREQFLRLVNKEIELYNSMIDSEGIEDEKAAMKAYRAAKDESGRSAEVEKQEEEEEDADEVSSALIDRVDAMLQKLEKEIDDVDAEIGDRFRLLDRDS DGKVTPDEVAAAANYLKNTLGKEGIQELISNLAKDSDGKIRVEDIVKLGSRLEDESGEGEEVGDERAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59820			LETM1-like protein (.1.2)		Lus10025602 [exp]	0	1
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10019634 [exp]	1.4	0.9409
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10019766 [exp]	3.0	0.9298
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10020397 [exp]	3.5	0.9387
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10033470 [exp]	6.6	0.9069
AT2G05710		ACO3	aconitase 3 (.1)		Lus10040070 [exp]	6.9	0.9174
AT2G04400			Aldolase-type TIM barrel famil...		Lus10012310 [exp]	8.2	0.9404
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10025866 [exp]	12.0	0.9341
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	12.6	0.9368
AT3G04600			Nucleotidylyl transferase supe...		Lus10026754 [exp]	13.9	0.9326
AT2G26830		EMB1187	embryo defective 1187, Protein...		Lus10019424 [exp]	16.8	0.9049

Compare expression of checked genes

Lus10025602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.