Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007302 [exp] 128 / 5e-36 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10007303 [exp] 121 / 4e-34 AT3G23950 45 / 6e-05 F-box family protein (.1) Lus10002769 [exp] 117 / 3e-33 AT1G15680 64 / 2e-11 F-box family protein (.1) Lus10016522 [exp] 117 / 3e-31 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10040838 [exp] 116 / 4e-31 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10013986 [exp] 112 / 9e-30 ND 55 / 7e-08 Lus10013987 [exp] 111 / 2e-29 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10003349 [exp] 111 / 2e-29 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10028293 [exp] 105 / 3e-29 AT4G22430 45 / 7e-06 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 52 / 2e-08 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.009G132400 [exp] 40 / 0.0002 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025603 pacid=23145014 polypeptide=Lus10025603 locus=Lus10025603.g ID=Lus10025603.BGIv1.0 annot-version=v1.0 ATGCCTGATAGAGTTGGAGGAGGAGGAGGAGAGACTCTTCACGTTTTCGATTGCTTCAAGGACTTGGTTTTGTGCGGGTTTTGGGATGCAGATCGCCAGA ATCCGAAACATATGAGATCGTACTTGATCTGCAATCCGTTTACGAAGGAGTGGCTGGCACTTCCTTTGGCACCTAGCTATAATAACATCCTGGCCTCACA CCAGTTGCAAGGAGGAGGAGGAGGAGATGACCAAGAAGTAGAAGCATTTATTTATTCCGAGTATCGCTTTCGGGTGGTGTATATGTATCAAGTTGTGCAT CCAGGCGTGTTTACAAACCTAGACGTGTTTTGTTCGGATTCTGGTGAATGGATGGTTCAGGCTTTTCGTATTGATAAGCATTATGATGCTCGGACATGA
AA sequence Show only first row Show all	>Lus10025603 pacid=23145014 polypeptide=Lus10025603 locus=Lus10025603.g ID=Lus10025603.BGIv1.0 annot-version=v1.0 MPDRVGGGGGETLHVFDCFKDLVLCGFWDADRQNPKHMRSYLICNPFTKEWLALPLAPSYNNILASHQLQGGGGGDDQEVEAFIYSEYRFRVVYMYQVVH PGVFTNLDVFCSDSGEWMVQAFRIDKHYDART

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025603 [exp]	0	1
AT4G18490			unknown protein		Lus10034597 [exp]	3.0	0.8114
AT5G61450			P-loop containing nucleoside t...		Lus10031740 [exp]	8.8	0.7879
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	9.9	0.8051
AT5G36930			Disease resistance protein (TI...		Lus10001375 [exp]	11.2	0.7742
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	13.5	0.7957
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	14.1	0.7731
					Lus10007227 [exp]	20.8	0.7366
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	23.6	0.7738
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	24.1	0.7951
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	24.3	0.7847

Compare expression of checked genes

Lus10025603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.