Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25710 492 / 2e-175 HCS1 holocarboxylase synthase 1 (.1.2) AT1G37150 467 / 3e-166 HCS2 holocarboxylase synthetase 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027084 [exp] 647 / 0 AT2G25710 486 / 7e-174 holocarboxylase synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G087700 [exp] 509 / 0 AT2G25710 482 / 3e-171 holocarboxylase synthase 1 (.1.2) Potri.005G173000 [exp] 508 / 0 AT2G25710 482 / 3e-172 holocarboxylase synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF03099 [flax] [poplar] BPL_LplA_LipB Biotin/lipoate A/B protein ligase family CL0206 [flax] [poplar] TRB PF02237 [flax] [poplar] BPL_C Biotin protein ligase C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025604 pacid=23145047 polypeptide=Lus10025604 locus=Lus10025604.g ID=Lus10025604.BGIv1.0 annot-version=v1.0 ATGCTTTTATCAACATCATCCATGCGTTTACTCTATACTTCCACCTTTAGCTCACTACTTAAGCTCGACTCTCCGGTTGCAAAGTGCTTGCGTCTTCAAT CGCATAGAGCAGGTTTGGTTATGGAAGGGAGCTCAGTGTGCAAGTTGGTGCTATGTGGGAAGTCGTCGGTGGAGAATGAAGTCGCTGAGTCTCTGAAGAA GAATAATACTATCAAGCTTCCTGACAGTGGTGACATATCTGTGTTGTTGAAACCAGAAGCTGATAAGCTGTGCGAACCAGATAAGTCTTTTGATGCGGGG CTTTACATGAATAGCCTTTCAACACTGCGATTCGGACGTCTTTTGATTTGGTCTCCCTTGTTAACTTCCACTCATGATGTTGTTTCCCGCAACTTTAGTG AGCTTCCGATTGGCACAGTTTGTGTTGCAGACGTGCAATGTAAAGGACGAGGCCGATCAAAGAATGTTTGGGAATCTCCTGTCGGGTGCTTATTGTTTTC ATTCACGATCGAAATGGAGGATGGAAGAGCGGTGCCTTTGTTGCAGTATGTAGTCTCTCTTGCTGTTACAGAGGCAATTAGGGAACTCTGCAATAAGAAT GGCTTACCTTTTATTGACACTAGAATAAAATGGCCTAATGACATTTACTTGAATGGTCTCAAAGTTGGGGGTATCTTGTGCACATCGACATACAGATCGA AGAAGTTCAATATCAGTGCAGGTATTGGATTGAATGTTGACAATGATAAACCAACAACATGCTTAAATACGGTCCTAAGAGCAATGTCCCATGATGGTTG TCGTTTAACACGAGAGGAACTTTTGGCTTCATTCTTTAACAAATTCGAGGAGCTTTACGATTTGTTTATAAACCAAGGATTTGGACCTCTGGAGAAACTC TACTACGGATCATGGCTGCACAGCGGGCAAAGAGTAATTATTCAAGAAAATGACAGCAATCAATCTAAGGAGAGTGTTGTAACAGTTCAGGGTTTGACGT CGTCGGGGTACTTGTTGGCCATGGGCGAAGATAATCAAATGTACGAACTTCATCCAGATGGAAACAGTTTTGACTTCTTCAAAGGATTGGTCAGAAGGAA ACTTGAATGA
AA sequence Show only first row Show all	>Lus10025604 pacid=23145047 polypeptide=Lus10025604 locus=Lus10025604.g ID=Lus10025604.BGIv1.0 annot-version=v1.0 MLLSTSSMRLLYTSTFSSLLKLDSPVAKCLRLQSHRAGLVMEGSSVCKLVLCGKSSVENEVAESLKKNNTIKLPDSGDISVLLKPEADKLCEPDKSFDAG LYMNSLSTLRFGRLLIWSPLLTSTHDVVSRNFSELPIGTVCVADVQCKGRGRSKNVWESPVGCLLFSFTIEMEDGRAVPLLQYVVSLAVTEAIRELCNKN GLPFIDTRIKWPNDIYLNGLKVGGILCTSTYRSKKFNISAGIGLNVDNDKPTTCLNTVLRAMSHDGCRLTREELLASFFNKFEELYDLFINQGFGPLEKL YYGSWLHSGQRVIIQENDSNQSKESVVTVQGLTSSGYLLAMGEDNQMYELHPDGNSFDFFKGLVRRKLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10025604 [exp]	0	1
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10037673 [exp]	3.5	0.8668
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	4.1	0.8929
AT1G50575			Putative lysine decarboxylase ...		Lus10003762 [exp]	9.7	0.8707
AT3G29270			RING/U-box superfamily protein...		Lus10003473 [exp]	10.4	0.8398
AT5G67390			unknown protein		Lus10011080 [exp]	10.6	0.8374
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10008593 [exp]	10.7	0.8133
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10040571 [exp]	12.0	0.8473
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10019962 [exp]	12.6	0.8602
AT3G03560			unknown protein		Lus10005694 [exp]	13.4	0.8376
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	14.8	0.8447

Compare expression of checked genes

Lus10025604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.