Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56180 632 / 0 ATARP8 actin-related protein 8 (.1.2) AT2G42100 132 / 3e-34 Actin-like ATPase superfamily protein (.1) AT2G42090 129 / 3e-33 ACT9 actin 9 (.1) AT2G42170 128 / 5e-33 Actin family protein (.1) AT2G37620 126 / 4e-32 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT3G53750 126 / 4e-32 ACT3 actin 3 (.1) AT3G12110 126 / 4e-32 ACT11 actin-11 (.1) AT5G09810 125 / 1e-31 ACT2/7, ACT7 actin 7 (.1) AT3G46520 120 / 8e-30 ACT12 actin-12 (.1) AT1G49240 119 / 1e-29 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027083 [exp] 548 / 0 AT5G56180 300 / 7e-99 actin-related protein 8 (.1.2) Lus10005819 [exp] 125 / 8e-32 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 125 / 8e-32 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 125 / 8e-32 AT5G09810 778 / 0.0 actin 7 (.1) Lus10016558 [exp] 124 / 4e-31 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 124 / 4e-31 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 124 / 4e-31 AT3G12110 768 / 0.0 actin-11 (.1) Lus10001693 [exp] 122 / 1e-30 AT3G12110 673 / 0.0 actin-11 (.1) Lus10001694 [exp] 121 / 3e-30 AT3G12110 766 / 0.0 actin-11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471700 [exp] 689 / 0 AT5G56180 672 / 0.0 actin-related protein 8 (.1.2) Potri.001G471400 [exp] 611 / 0 AT5G56180 630 / 0.0 actin-related protein 8 (.1.2) Potri.006G139900 [exp] 127 / 2e-32 AT5G09810 554 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 125 / 7e-32 AT5G09810 731 / 0.0 actin 7 (.1) Potri.019G010400 [exp] 125 / 8e-32 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 125 / 9e-32 AT5G09810 775 / 0.0 actin 7 (.1) Potri.010G204300 [exp] 124 / 3e-31 AT3G12110 733 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 124 / 3e-31 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 124 / 3e-31 AT3G12110 767 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 124 / 3e-31 AT3G12110 765 / 0.0 actin-11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10025605 pacid=23144958 polypeptide=Lus10025605 locus=Lus10025605.g ID=Lus10025605.BGIv1.0 annot-version=v1.0 ATGTCCGTCTTACTCCGAAAGGTCTGGGAATCCGTCGTCAACAGGCCAAGCCCTTCACCCGCTGCTTCCAAATTCGAATCCCTCTCTCACCGAAGCTCTA TCTCCTCTTCTTCTTCATCATCTTCATCGTCACTGCCGTCGTTGCTATCGCTCGGATCCTTCGATCGGTTGCCGATTGACATTTTGGTACAGATTGTGAG ACTAGTTGGACCTGAGGGCGCTGCCAGTCTCTCTGTCGCTTCCAAATCATGGAGATCGCTCGTCTCCGATAATCGCCTCTGGATTTTCTTCCTCCAGGAC GGTGACGAGCCTTGGCCTTGGGACTCTGTTTTCTTCGCCGAGGTTAATCTCCGCTTCGGCTATCCTCTCCAGACATTCCCCAGCCATTTGGCCACGGAGC TTTCTCTGATGCGCGTCTATGGTGAACGAAGAAAAGTACCAGGAGCCGTAATAATTGACGGTGGGTCGGGCTATTGCAAATTTGGGTGGAGCAAATATGG TAGTCCATCAGGGCGGTCAGCCACATTTTTGGAATTTGGCAACATCGAATCCCCAATGTACTCGAGGCTACGGCACTTTTTTGCTACTATGTATAGCAGG ATGCAAGTCAAGGCATCTACTCAGCCAGTTGTTTTGTCCCTCCCAATTTGCCATTATGATGATACAGAAGCTGCCAGAGCATCAAGACGGCAACTAAAAG GAGCCATCCACACTGCTCTTTTTGACATGAATGTCCCAGCTATATGTGCAATTAATCAGGCAGTTCTGGCTCTCTATGCAGCCCACCGAACTTCAGGAAT TGTTGTTAATGTTGGTTTCCAATCAACTTCTGTAGTCCCAATTTTAAATGGAAAGGTAATGCACAATATAGGGGTGGAAGTGATTGGTATTGGTGCTTTA AAAGTAACAGGTTTCCTGAAGGAACAGATGCTACAGAACAACATAAACTGTGAATCTCTATACACTATTCGCACACTCAAAGAGAACATGTGCTATGTTG CTGAAGATTATCAAGCTGAGCTACGTAAAGATACTAGAGCATCTATAGAACTCCCAGGAGATGGACAGTTTACACTTTCAACAGAACGGTTCAAAACAGG GGAGATTCTGTTCCAACCAAGACTTGCAGGAGTGCGCACTATGGGATTGCACCAGGCGGTATCACTTTGTATGGGCCATTGTCATGATGCGGAGTTAGCT GGTGACGACTCTTGGTTCAAAACAGTAGTTTTGGCAGGTGGTACGGCTTGCTTACCAGGACTTGCAGAAAGGCTCGATAAGGAAGTTCGTCAGCTTCTTC AACCTTCGGTGTGCAAGGGGTTTAGAGTACTCCCTCCCCCGTACGGTGTAGATACTGCATGGTTTGGTGCTAAGCTTGTCAGCAATTTAAGCTCCTTCCC GGATGCCTGGTGTGTTACGAAGAAAAACTTCAAGCGGAAGTCGCGTTTCAACCTTGCCTGGTAA
AA sequence Show only first row Show all	>Lus10025605 pacid=23144958 polypeptide=Lus10025605 locus=Lus10025605.g ID=Lus10025605.BGIv1.0 annot-version=v1.0 MSVLLRKVWESVVNRPSPSPAASKFESLSHRSSISSSSSSSSSSLPSLLSLGSFDRLPIDILVQIVRLVGPEGAASLSVASKSWRSLVSDNRLWIFFLQD GDEPWPWDSVFFAEVNLRFGYPLQTFPSHLATELSLMRVYGERRKVPGAVIIDGGSGYCKFGWSKYGSPSGRSATFLEFGNIESPMYSRLRHFFATMYSR MQVKASTQPVVLSLPICHYDDTEAARASRRQLKGAIHTALFDMNVPAICAINQAVLALYAAHRTSGIVVNVGFQSTSVVPILNGKVMHNIGVEVIGIGAL KVTGFLKEQMLQNNINCESLYTIRTLKENMCYVAEDYQAELRKDTRASIELPGDGQFTLSTERFKTGEILFQPRLAGVRTMGLHQAVSLCMGHCHDAELA GDDSWFKTVVLAGGTACLPGLAERLDKEVRQLLQPSVCKGFRVLPPPYGVDTAWFGAKLVSNLSSFPDAWCVTKKNFKRKSRFNLAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	0	1
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	1.0	0.8803
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	2.4	0.8374
AT4G03260			Outer arm dynein light chain 1...		Lus10018514 [exp]	2.8	0.8355
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	3.0	0.7873
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002347 [exp]	4.2	0.7667
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	5.8	0.7681
AT4G03260			Outer arm dynein light chain 1...		Lus10039729 [exp]	6.5	0.7771
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	6.5	0.8443
AT3G03890			FMN binding (.1.2)		Lus10010649 [exp]	7.5	0.7908
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10033120 [exp]	8.9	0.7328

Compare expression of checked genes

Lus10025605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.