Plant FIBer expression Database

Lus10025607 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G56280 234 / 5e-78 CSN6A COP9 signalosome subunit 6A (.1)
AT4G26430 231 / 1e-76 CSN6B COP9 signalosome subunit 6B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027082
[exp]
286 / 3e-98 AT5G56280 527 / 0.0 COP9 signalosome subunit 6A (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G169900
[exp]
265 / 4e-90 AT5G56280 511 / 0.0 COP9 signalosome subunit 6A (.1)
PFAM info
Representative CDS sequence
>Lus10025607 pacid=23144982 polypeptide=Lus10025607 locus=Lus10025607.g ID=Lus10025607.BGIv1.0 annot-version=v1.0
ATGGATATTAATGAAAGCCCTGTCTATGTTCTGCTGAATCCTGGCATAAATCATGCTCAGAAGGATCTTCCAGTGACTATTTTTGAAAGTGAGCTGCATG
TGATAGAAGGAATTCCACAACTTATTTTTGTCTGCTCAAGCTACACAATTGAGGTTTTTTCTATTGCAGTGGCTGCTCATCTTACTGGCATACACAGTGC
CATCAAGATGTTAAACAGCAGAATTAAGGTGCTTCATTACTATCTTGTAGAAATGCAGAAAGGTGTGATTCCCCGCGATAACTCTTTGCTTAGACAAGTA
TCGAGCCTTCTGAGAAGACTGCCAGCTATTGAATCTGAAAAGTTTCAAGATGATTTCTTAATGGAATATAACGACACACTATTGATAGCTTACCTGGCCA
TGATGACCAATTGCTCAAGTACAATGAACGAGCTGGTAGATAAGTTCAACACCGCATACGATAGGCAGAGTCGAAGGGGCGGCCGAACTGCTTTCATCTA
A
AA sequence
>Lus10025607 pacid=23144982 polypeptide=Lus10025607 locus=Lus10025607.g ID=Lus10025607.BGIv1.0 annot-version=v1.0
MDINESPVYVLLNPGINHAQKDLPVTIFESELHVIEGIPQLIFVCSSYTIEVFSIAVAAHLTGIHSAIKMLNSRIKVLHYYLVEMQKGVIPRDNSLLRQV
SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMMTNCSSTMNELVDKFNTAYDRQSRRGGRTAFI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G56280 CSN6A COP9 signalosome subunit 6A (.... Lus10025607
[exp]
0 1
AT3G14750 unknown protein Lus10013698
[exp]
3.6 0.8010
AT5G59950 RNA-binding (RRM/RBD/RNP motif... Lus10025329
[exp]
8.1 0.8418
AT1G24265 Protein of unknown function (D... Lus10011347
[exp]
14.5 0.8361
AT1G11790 AtADT1, ADT1 Arabidopsis thaliana arogenate... Lus10015130
[exp]
18.5 0.7920
AT1G14650 SWAP (Suppressor-of-White-APri... Lus10025705
[exp]
25.6 0.8311
AT1G73840 ESP1 ENHANCED SILENCING PHENOTYPE 1... Lus10009030
[exp]
25.7 0.8316
AT2G01710 Chaperone DnaJ-domain superfam... Lus10015891
[exp]
40.6 0.7789
AT1G49870 unknown protein Lus10013902
[exp]
72.1 0.7512
AT5G57950 26S proteasome regulatory subu... Lus10036267
[exp]
99.3 0.7515
AT1G13220 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI... Lus10034383
[exp]
104.5 0.7687

Lus10025607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.