Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43970 286 / 8e-90 RNA-binding protein (.1.2) AT3G19090 204 / 9e-60 RNA-binding protein (.1) AT5G46250 171 / 1e-47 RNA-binding protein (.1.2.3) AT4G32720 56 / 3e-08 ATLA1 La protein 1 (.1.2) AT1G79880 52 / 5e-07 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027080 [exp] 769 / 0 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10012058 [exp] 215 / 3e-63 AT3G19090 427 / 2e-146 RNA-binding protein (.1) Lus10027925 [exp] 176 / 2e-50 AT3G19090 291 / 8e-96 RNA-binding protein (.1) Lus10023315 [exp] 174 / 5e-49 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10038494 [exp] 171 / 6e-48 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10022135 [exp] 60 / 3e-09 AT4G32720 389 / 6e-133 La protein 1 (.1.2) Lus10038624 [exp] 55 / 1e-07 AT4G32720 360 / 3e-121 La protein 1 (.1.2) Lus10011685 [exp] 53 / 5e-07 AT4G32720 382 / 1e-128 La protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144800 [exp] 386 / 7e-129 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.017G007400 [exp] 372 / 1e-123 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.004G144700 [exp] 218 / 2e-65 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.009G106500 [exp] 213 / 2e-63 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.011G080700 [exp] 151 / 6e-41 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07145 [flax] [poplar] PAM2 Ataxin-2 C-terminal region CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10025608 pacid=23145029 polypeptide=Lus10025608 locus=Lus10025608.g ID=Lus10025608.BGIv1.0 annot-version=v1.0 ATGGCACAAGACGGAACTGAATCACCACCGGAAACCCTAGAAAAACCTCACCAGTCCTCTACATCTCCGGTCGATTCCCCTACGGCTGATTCCGCCGATC CTTCACTATCTCGCACTGGATCGTTCAGTAAGCTCAACGCTCGAGCTCCAGAGTTCGTCCCTAGTACTACTGCTCGCCCGCAGCAACCGCCTCCAGCTCC TCCGCCGACGAGGCTTTCTGTGATCCCGCCACCTGCTGCTTCTGCTATGATGCATATGTATCCGCCTGCTAATTCTCCTCCTCCTCCAGCGGTTACTCCG CCGTCTCCTTACCATGTCCAGATTCACAGTCCTGTGCCGGTAGCTCATGTCATCACGGTACAGAGTCACCATCACCGTCCGCATCATCATAACCAGCTGC AGCAGCCTCAGCAGCAGTATGTTCCTGTTCGAAATCACAACAATCATCACCACCACCACTTCGCTCAGAACACTCACTATATCCCCGTACAGGCCCACGC CAATCAGAATCATCATTATGGTCCTGTTTCCAAGAAGTTGCAGCAGCAATCGGAGGAAGGAGAGCAAAGCGAAATTCCAGATCACGGACGGTCGAAGAAC GACAGGGCCGATAGAAGTGGGTTCTCTGATGACAATATGCAGAAGCTTGTGAATCAAGTAGAGTACTATTTCAGCGACTTAAACTTGGCTACTACTGATC ATCTGATGAGGTTCATCAGCAAGGATCCTGATGGATATGTGCCGATAAGTGTTGTAGCTTCATTCAAGAAGGTCAAAGCTGCTGTAAATAACAATGTTCA ACTTGCCAACATTTTAAAGAACTCTTCGAAGCTTGCTGTCAGTGAAGATGGGAAAAAAGTCAAACGTCAGCACCCATTTACTGAGCAGGATGTGGAAGAT TTGCAATCCCGCATCATTGTTGCTGAAAATTTACCGGAGGATCATTGCCACCAAAACCTAATGAAGATTTTCTCATCTGTTGGAAGTGTCAAGACTATTC GCACCTGCCCTCCTCAAAATCCTGCTGGGGCTTCGTCAGCGACTAGATCGACGAAATCTGAAGGAATGTACTTCATTAACAAGTTGCATGCATTTGTGGA GTATGACTCTGTGGAGATAGCTGAGAAAGCAGTTATGGAGCTCAATGATGAAGCGAACTGGAGGAATGGTCTTAGGGTTCGACTAATGCTTAAACGTCCA TCAAAGACGGCGCGAGGGAAGAATGGTAACGATGGGCCAGAGGAAGAGGAGGTTTCTACCTCTGAGCAGCAGCCAAATGAAAAGCCTGTTGAAGATTTTT CTAGCCAGCAGCATGATGTCCACTTCAATGACTCTTCTAGGGAGGATAATCACAATGAGAAGGAAGGGGTGCAGAGAAAAGGCCGTGGTAGAGGGGGACG GGGAAAGGGACAGGGACGCGGCCGGGGCCATTCTCACCACAACAGCGGCCGAGGAAATCACACCGTTGGGAATCCATCGTCAGGTAACGCTGCAGCCGGT ACATCTGAGCAGCAGCCGAGTACATTGAAGCAAGCACCTCCACCAGGGCCCCGAATGCCCGATGGGACCAGAGGTTTCGCAATGGGGCGTGGGAAGCCAA TCTCTGTTATTGCGGCATGA
AA sequence Show only first row Show all	>Lus10025608 pacid=23145029 polypeptide=Lus10025608 locus=Lus10025608.g ID=Lus10025608.BGIv1.0 annot-version=v1.0 MAQDGTESPPETLEKPHQSSTSPVDSPTADSADPSLSRTGSFSKLNARAPEFVPSTTARPQQPPPAPPPTRLSVIPPPAASAMMHMYPPANSPPPPAVTP PSPYHVQIHSPVPVAHVITVQSHHHRPHHHNQLQQPQQQYVPVRNHNNHHHHHFAQNTHYIPVQAHANQNHHYGPVSKKLQQQSEEGEQSEIPDHGRSKN DRADRSGFSDDNMQKLVNQVEYYFSDLNLATTDHLMRFISKDPDGYVPISVVASFKKVKAAVNNNVQLANILKNSSKLAVSEDGKKVKRQHPFTEQDVED LQSRIIVAENLPEDHCHQNLMKIFSSVGSVKTIRTCPPQNPAGASSATRSTKSEGMYFINKLHAFVEYDSVEIAEKAVMELNDEANWRNGLRVRLMLKRP SKTARGKNGNDGPEEEEVSTSEQQPNEKPVEDFSSQQHDVHFNDSSREDNHNEKEGVQRKGRGRGGRGKGQGRGRGHSHHNSGRGNHTVGNPSSGNAAAG TSEQQPSTLKQAPPPGPRMPDGTRGFAMGRGKPISVIAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43970			RNA-binding protein (.1.2)		Lus10025608 [exp]	0	1
AT5G17010			Major facilitator superfamily ...		Lus10009573 [exp]	2.8	0.9328
AT1G47640			unknown protein		Lus10032870 [exp]	10.1	0.9116
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	11.0	0.9088
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Lus10037094 [exp]	12.3	0.8877
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	13.0	0.9187
AT5G37190		CIP4	COP1-interacting protein 4 (.1...		Lus10006453 [exp]	13.5	0.9103
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	15.0	0.9082
AT5G22280			unknown protein		Lus10043403 [exp]	16.3	0.9002
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	17.1	0.9163
AT3G12260			LYR family of Fe/S cluster bio...		Lus10026163 [exp]	17.5	0.8837

Compare expression of checked genes

Lus10025608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.