Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44140 510 / 3e-179 Peptidase family C54 protein (.1.2) AT3G59950 489 / 9e-171 Peptidase family C54 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027079 [exp] 796 / 0 AT2G44140 552 / 0.0 Peptidase family C54 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G147100 [exp] 566 / 0 AT2G44140 534 / 0.0 Peptidase family C54 protein (.1.2) Potri.017G000500 [exp] 564 / 0 AT2G44140 523 / 0.0 Peptidase family C54 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF03416 [flax] [poplar] Peptidase_C54 Peptidase family C54
Representative CDS sequence Show only first row Show all	>Lus10025609 pacid=23145137 polypeptide=Lus10025609 locus=Lus10025609.g ID=Lus10025609.BGIv1.0 annot-version=v1.0 ATGAAGGGTTTTCATGAGGAGGCTGATAGTTCAAAAATCTGTTTAGAAACGCCTACTGGGTCGTCAACAAGTACTTCAACATCCGATTGTTTCGAACACA GACCCAGTAACAGCAAGTTCTCAAGGGAATCATTGTGGTCGAGCTTCTTTTCATCTGCTTTCTCAGCCTTTGAGTCATATCGTGGTTCATCAACTCGTGA AAAAAAGGAGGTTCATATCAAAGGTAATGGTTGGACGTCAGTTGTAAAGAAAGTTGTGGCTGGCAGTTCAATGAGGCGACTTCATGAGCGGGTACTTGGA CCAACGAATGTTGGGATACCTACCTCAACAAGTGACATATGGCTGCTGGGTACATGCTATAAGATTTTATGTGATGGTTGCCCTGCAGATGTAGCTATAA GCAATACTTTAGCTGAATTTACCGAGGATTTTTCATCTAGAATCCTAATTACATACAGGAAAGGTTTTGTTGCCATTGGAGATTCAAAGTTTACGAGTGA TGTTGGCTGGGGCTGCATGGTTCGAAGCAGCCAGATGTTGATTGCTCAAGCATTGCTTTGTCACCAGTTCGGTAGATCTTGGAGAAGACCTTTGGCCAAG CCAGTAGAGCAAGATTATATCAATACCTTGCACCTTTTTGGTGATTCAGAGGCATCAGCATTCTCCATCCACAATCTTCTTCTAGCTGGAAAGAGTTACG GCCTTGCAGCTGGATCATGGGTAGGGCCATATGCTATGTGCCGGTCCTGGGAAGCTCTGGTTCACTCAAAGAAAGAGGATACCATCCCTGGGTTCCGGTC ATTTCCGATGGCTCTTTACATTGTTTCTGGAGATGAAAATGGGGAACGAGGTGGCGCTCCAGTTGTCTGCATTGAAGATGCCCATAAAAGTTGTTTAGCA TTTTCTGATGGACAGAGAGACTGGACTCCGATTCTTCTATTGGTTCCTCTTGTCCTCGGACTTGACAAAGTAAACCCCAGGTATATTCCGTCTCTCCAGG CAACATTCACCTTTCCCCAGAGCCTTGGCATTCTAGGTGGAAAACCTGGTGCTTCGACATACATGGTTGGGGTGCAAGATGACAATGCTTTTTATCTTGA TCCACACGACGTCCAGCAGGTAGTCAGCATCCGCAGAGATGATTTGGAGGCTGATACATCATCGTACCATTCCAACGTCATACGACATATTCCCCTGGAA TCAATTGATCCCTCACTCGCGATTGGGTTCTACTGCCGAGACAAAGATGACTTTGATGAGTTCTGTTCATTGGCTTCCAAGTTAGCCGAAGAGTCAAACG GCGCACCATTATTTACGGTGGCGCAATCCCTTAAAAGTACATTTGTCGGCAGCAGCGATGGTTACCAGGGAGAAGATGGCGGCGAGGAGGGCCACGATGG GCAGCATGAAGACGAGTGGCAGTTGCTCTAA
AA sequence Show only first row Show all	>Lus10025609 pacid=23145137 polypeptide=Lus10025609 locus=Lus10025609.g ID=Lus10025609.BGIv1.0 annot-version=v1.0 MKGFHEEADSSKICLETPTGSSTSTSTSDCFEHRPSNSKFSRESLWSSFFSSAFSAFESYRGSSTREKKEVHIKGNGWTSVVKKVVAGSSMRRLHERVLG PTNVGIPTSTSDIWLLGTCYKILCDGCPADVAISNTLAEFTEDFSSRILITYRKGFVAIGDSKFTSDVGWGCMVRSSQMLIAQALLCHQFGRSWRRPLAK PVEQDYINTLHLFGDSEASAFSIHNLLLAGKSYGLAAGSWVGPYAMCRSWEALVHSKKEDTIPGFRSFPMALYIVSGDENGERGGAPVVCIEDAHKSCLA FSDGQRDWTPILLLVPLVLGLDKVNPRYIPSLQATFTFPQSLGILGGKPGASTYMVGVQDDNAFYLDPHDVQQVVSIRRDDLEADTSSYHSNVIRHIPLE SIDPSLAIGFYCRDKDDFDEFCSLASKLAEESNGAPLFTVAQSLKSTFVGSSDGYQGEDGGEEGHDGQHEDEWQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44140			Peptidase family C54 protein (...		Lus10025609 [exp]	0	1
AT4G08480		MEKK2, MAPKKK9	MAPK/ERK KINASE KINASE 2, mito...		Lus10029657 [exp]	1.4	0.9438
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	2.4	0.9421
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	3.7	0.9443
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	4.9	0.9384
AT2G37840			Protein kinase superfamily pro...		Lus10022593 [exp]	5.1	0.9179
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	5.2	0.9314
AT1G30540			Actin-like ATPase superfamily ...		Lus10033600 [exp]	5.3	0.9252
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10016999 [exp]	5.9	0.9359
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	6.9	0.9389
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	8.9	0.9387

Compare expression of checked genes

Lus10025609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.