Plant FIBer expression Database

Lus10025610 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59970 1035 / 0 MTHFR1 methylenetetrahydrofolate reductase 1 (.1.2.3)
AT2G44160 1019 / 0 MTHFR2 methylenetetrahydrofolate reductase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027078
[exp]
1253 / 0 AT3G59970 1037 / 0.0 methylenetetrahydrofolate reductase 1 (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G000300
[exp]
1068 / 0 AT2G44160 1038 / 0.0 methylenetetrahydrofolate reductase 2 (.1)
Potri.007G147300
[exp]
1061 / 0 AT2G44160 1048 / 0.0 methylenetetrahydrofolate reductase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0086 FAD_oxidored PF02219 MTHFR Methylenetetrahydrofolate reductase
Representative CDS sequence
>Lus10025610 pacid=23145068 polypeptide=Lus10025610 locus=Lus10025610.g ID=Lus10025610.BGIv1.0 annot-version=v1.0
ATGAAGGTGATAGATAAGATCAGATCAGCTGTCGGCGACTCACCGTCGGCCAATGGCGGGGATGTCTCCGGCAAGAACGTCGTCTTCTCCTTCGAGTTCT
TCCCTCCCAAGACCGATGACGGCGTCGAGAACCTCTTCGAGAGGATGGACCGGATGGTGGCTCACAACCCTACCTTCTGCGACATCACCTGGGGAGCTGG
AGGCTCCACCGCCGATCTCACCCTCGACATCGCCAAGAGGATGCAGAACTCCGTCTGCGTCGAGACCATGATGCACCTCACCTGCACCAACATGCCTGTC
GAGAAGATCGATCACGCGCTCGACACTATCAAATCCAACGGCATTCAGAATGTCCTCGCTCTCCGCGGTGATCCTCCCCATGGCCAGGACAAGTTCGTCC
AGATCCAAGGTGGATTCGCTTGTGCTCTCGACCTGGTGAAGCACATGAGATCCAAGTATGGAGACTACTTCGGCATTACTGTTGCTGGCTATCCAGAGGC
TCATCCTGATGTGATCGGAAGTGATGGCCTAGCCACGCCAGAAGCTTATCAGAGCGATCTTGCTTATTTGAAGCAGAAGGTTGATGCTGGAGCGGATCTG
ATTGTCACTCAACTCTTCTATGATACTGATATTTTCCTTAAATTCGTCAATGACTGCCGCCAAATTGGAATCACTTGCCCAATTGTGCCTGGCATTATGC
CTATTAACAACTACAAGGGATTCATCAGAATGACTGGGTTTTGCAAAACTAAGATACCAGCTGAGGTCACTGCTGCATTGGAACCCATCAAAGACAACGA
TGAAGCTGTCAGAGCATATGGAGTTCATCTTGGAGCAGAAATGTGCAAGAAGATCATAGCTCATGGGATTAGTACAGTGCACCTTTACACGCTAAACATG
GAGAAGTCAGCACTGGGCATACTATCGACTCTTGGTGCGATTGAAGAGTCCAAGATCTCAAGGTCTCTGCCGTGGCGGCGTCCAGCAAATATTCACCGTG
TGAAAGAAGATGTCCGCCCAATATTTTGGGCTAACCGTCCAAAGAGCTATTTATCAAGGACAGTTGGCTGGGAGCAATACCCACACGGGAGATGGGGTGA
TTCTGGTAATCCATCCTACAGTGCTTTGAGTGATCACCAGTTCATGCGTCCACGATCACGCGACAAGAAGCTTCAAGAAGAGTGGGCTATCCAGCTCAGC
AGTGTTGAAGATATCTATGAGAGGTTCAAGAATTACTGCCTCGGGACCTCGAAGAGCAGCCCATGGTCAGAATTAGATGGCCTTCAGCCAGAGACAAAGA
TCATCAATGAAAAACTTGGCAAGATCAACTCCAAGGGATTCTTAACCATCAACAGTCAACCCGCAGTCAACGGGGAGAAGTCTGATTCCCCAATTGTTGG
CTGGGGAGGCCCAGGAGGATATGTATACCAAAAGGCATATCTGGAGTTCTTCTGCTCAAAGGAGAAACTCGATAAGTTGGTGGAGAAGTCCAAGGCCTTC
CCTCAACTCAGTTACATTGCAGTGAACAAATCGGGGAGTTTGTTCTCGAATGTCGGAGAAGGCGCTGTGAATGCGGTGACATGGGGAGTTTTCCCAGCAA
AGGAGATCCTGCAGCCAACAGTGGTGGATCCTGCAAGCTTCTTAGTGTGGAAGGATGAGGCTTTCGAGATCTGGTCGAGAGGCTGGGCTTCCTTGTACCC
GGAAGACGATCCTTCCCGAAAATTGCTTAAAGAGGTGGAGAGCAGCTACTATTTGGCGAGTTTGGTAGATAACGACTATGTGAATGGTGATATCTTCTCG
GCATTCGACTTGTGA
AA sequence
>Lus10025610 pacid=23145068 polypeptide=Lus10025610 locus=Lus10025610.g ID=Lus10025610.BGIv1.0 annot-version=v1.0
MKVIDKIRSAVGDSPSANGGDVSGKNVVFSFEFFPPKTDDGVENLFERMDRMVAHNPTFCDITWGAGGSTADLTLDIAKRMQNSVCVETMMHLTCTNMPV
EKIDHALDTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHMRSKYGDYFGITVAGYPEAHPDVIGSDGLATPEAYQSDLAYLKQKVDAGADL
IVTQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFIRMTGFCKTKIPAEVTAALEPIKDNDEAVRAYGVHLGAEMCKKIIAHGISTVHLYTLNM
EKSALGILSTLGAIEESKISRSLPWRRPANIHRVKEDVRPIFWANRPKSYLSRTVGWEQYPHGRWGDSGNPSYSALSDHQFMRPRSRDKKLQEEWAIQLS
SVEDIYERFKNYCLGTSKSSPWSELDGLQPETKIINEKLGKINSKGFLTINSQPAVNGEKSDSPIVGWGGPGGYVYQKAYLEFFCSKEKLDKLVEKSKAF
PQLSYIAVNKSGSLFSNVGEGAVNAVTWGVFPAKEILQPTVVDPASFLVWKDEAFEIWSRGWASLYPEDDPSRKLLKEVESSYYLASLVDNDYVNGDIFS
AFDL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G59970 MTHFR1 methylenetetrahydrofolate redu... Lus10025610
[exp]
0 1
AT5G17920 ATCIMS, ATMETS,... methionine synthesis 1, COBALA... Lus10020273
[exp]
1.0 0.9804
AT5G17920 ATCIMS, ATMETS,... methionine synthesis 1, COBALA... Lus10008422
[exp]
2.8 0.9274
AT4G13930 SHM4 serine hydroxymethyltransferas... Lus10043157
[exp]
2.8 0.9688
AT5G03300 ADK2 adenosine kinase 2 (.1) Lus10023532
[exp]
3.5 0.9528
AT3G17390 MAT4, SAMS3, MT... S-ADENOSYLMETHIONINE SYNTHETAS... Lus10004522
[exp]
4.5 0.9488
AT5G03300 ADK2 adenosine kinase 2 (.1) Lus10040417
[exp]
4.5 0.9484
AT3G53420 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROT... Lus10041397
[exp]
5.9 0.8879
AT4G37930 SHMT1, STM, SHM... SERINE HYDROXYMETHYLTRANSFERAS... Lus10042923
[exp]
7.3 0.9207
AT3G52020 SCPL39 serine carboxypeptidase-like 3... Lus10039582
[exp]
8.1 0.9193
AT1G26570 UGD1, ATUGD1 UDP-glucose dehydrogenase 1 (.... Lus10004656
[exp]
8.4 0.9285

Lus10025610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.