Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59980 273 / 2e-91 Nucleic acid-binding, OB-fold-like protein (.1) AT4G13780 135 / 3e-35 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) AT2G40660 110 / 3e-27 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027077 [exp] 414 / 2e-146 AT3G59980 284 / 4e-96 Nucleic acid-binding, OB-fold-like protein (.1) Lus10022571 [exp] 162 / 2e-44 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10016658 [exp] 160 / 6e-44 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10034239 [exp] 117 / 1e-29 AT2G40660 413 / 3e-143 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029026 [exp] 114 / 1e-28 AT2G40660 424 / 1e-147 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G000200 [exp] 285 / 9e-96 AT3G59980 276 / 6e-93 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G317500 [exp] 154 / 1e-41 AT4G13780 1260 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.017G057700 [exp] 147 / 2e-39 AT4G13780 1255 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.019G058700 [exp] 112 / 5e-28 AT2G40660 396 / 6e-137 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01588 [flax] [poplar] tRNA_bind Putative tRNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10025611 pacid=23145136 polypeptide=Lus10025611 locus=Lus10025611.g ID=Lus10025611.BGIv1.0 annot-version=v1.0 ATGGCGCTGGCAGCAACCGCGGCCAACTCCACCCAGACGGCGGGGGGCGCCGCGGGCGGCCACAAACTCCTAGGNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGCAGCAGCGGCCGCCACTATTCTCAGAGGCAGCAATAGACTTCCACC GCTCCTTCCACGATCACCTCCTCCCAATGCAGTCTCTTGCTCCCTTTCTCGCTTCCGATTTCGCCCCTTGACAACTACTACCTTCACCAACAGCAGAGCG CTCCCGTCAATCTCCCGCGAAACTCCTCCCTTCGTATCTTTCTGTACATCTACAGAGGCAGCCAGCGTCAACTCGAGCTCGGCAGACAATCCACCCGCCG CAGCCGACGGAGGTCAGAATCCGAAGAAAGAAGAGACAGAGGGCGGCGGTACAAGAGATGCGGCTAACTTGCTCGACCTAAGGGTGGGGAAGATAATCAA AGCATGGATACACGAGGAGGCCGATTCGCTTTACGTGGAGGAGGTAGACGTCGGAGAAGCCGAACCTCGCATAATTTGCAGCGGCCTTGTCAAGTACATT CCCCTGCAACATCTTGAGGACAGGAAAGTGGTGGTGCTAGCTAATTTGAAGCCAAGGAACATGCGTGGGGTGAAATCAAATGGAATGCTGATGGCTGCTT CTGATGCTGCCCATGAAAACGTTGAGCTTCTCGAGCCGCCGGAAGGTTCGATCCCCGGGGAGAGAATCTGGTTTGGCTCTGAGGATGAAAAAGATGCCCA ACCTGACCCAGCCTCTCCTAACCAGGTTCAAAAGAAGAAGATATGGGAAGCTGTGCAACCTCGTCTGAAGACCAACAATACCGGAGTAGCTATGCTCGAG GAGCATGAAATGAGGACATCGTCGGGTGTGGTAGTGAGCAAGTCTCTGTTGAATGCAAATATATCTTGA
AA sequence Show only first row Show all	>Lus10025611 pacid=23145136 polypeptide=Lus10025611 locus=Lus10025611.g ID=Lus10025611.BGIv1.0 annot-version=v1.0 MALAATAANSTQTAGGAAGGHKLLXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAATILRGSNRLPPLLPRSPPPNAVSCSLSRFRFRPLTTTTFTNSRA LPSISRETPPFVSFCTSTEAASVNSSSADNPPAAADGGQNPKKEETEGGGTRDAANLLDLRVGKIIKAWIHEEADSLYVEEVDVGEAEPRIICSGLVKYI PLQHLEDRKVVVLANLKPRNMRGVKSNGMLMAASDAAHENVELLEPPEGSIPGERIWFGSEDEKDAQPDPASPNQVQKKKIWEAVQPRLKTNNTGVAMLE EHEMRTSSGVVVSKSLLNANIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	4.2	0.7944
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	4.2	0.7856
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10013652 [exp]	4.5	0.7412
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	4.5	0.7795
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10030225 [exp]	6.0	0.7490
AT5G24690			Protein of unknown function (D...		Lus10022966 [exp]	7.9	0.7087
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10029372 [exp]	8.1	0.7893
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	8.8	0.7384
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10041952 [exp]	15.0	0.7693
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	15.1	0.7648

Compare expression of checked genes

Lus10025611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.