Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60360 203 / 1e-62 RING/U-box superfamily protein (.1) AT3G19950 107 / 3e-26 RING/U-box superfamily protein (.1) AT3G56580 103 / 7e-25 RING/U-box superfamily protein (.1.2.3) AT2G40830 100 / 9e-24 RHC1A RING-H2 finger C1A (.1.2.3) AT3G46620 91 / 4e-20 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G10815 85 / 3e-19 RING/U-box superfamily protein (.1) AT4G26400 84 / 5e-18 RING/U-box superfamily protein (.1.2) AT5G59550 84 / 6e-18 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G13430 82 / 2e-17 RING/U-box superfamily protein (.1.2.3) AT5G56340 82 / 4e-17 ATCRT1 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028063 [exp] 553 / 0 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10030755 [exp] 113 / 9e-29 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 111 / 7e-28 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10010179 [exp] 103 / 2e-25 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10001582 [exp] 91 / 3e-21 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10017383 [exp] 84 / 1e-19 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1) Lus10003698 [exp] 87 / 2e-19 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10001611 [exp] 86 / 1e-18 AT1G68180 156 / 2e-46 RING/U-box superfamily protein (.1) Lus10040783 [exp] 85 / 1e-18 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085800 [exp] 238 / 9e-76 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.006G032100 [exp] 107 / 2e-26 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.015G127600 [exp] 106 / 6e-26 AT1G68180 158 / 1e-46 RING/U-box superfamily protein (.1) Potri.016G029300 [exp] 105 / 7e-26 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.012G036700 [exp] 105 / 2e-25 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 101 / 1e-24 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 99 / 2e-23 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 96 / 2e-22 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.012G126700 [exp] 89 / 6e-20 AT1G68180 138 / 4e-39 RING/U-box superfamily protein (.1) Potri.001G243300 [exp] 89 / 2e-19 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10025612 pacid=23145051 polypeptide=Lus10025612 locus=Lus10025612.g ID=Lus10025612.BGIv1.0 annot-version=v1.0 ATGTCATTGAGCCCGCCGAGAACCCGACCCTCCGCCACCTCCGAGGAGAATGGCAGTACAAGAGCCTTTCAGCTCTATTGGTGCTTCCAATGCCATCGCG CCGTCTCCATCGCTACCCCGACCAATGCCACCACATCTCAGCCTGCGACATGTCCTCGATGTTCGGGGCATTTCATTGTCGAGATCAATACCAACAACAA CAGCGGTCAGCGAAGGCCTAGGCTGGTGGTCAACTTCACCGAATTCGATCCTTCCCCTGAAGCTCGATTACTCGAGGCTCTGTCTCTGGTCCTGGACCCG CCACTGATGGGAACAACAGCACCACTGGAGACCGGTTTCCCACGAGGTCGAGATACATGGCCACGACGAAGGCCTACCGAGGATGGCATTGGCTCGGATT TGAACGTCCCCACTACAGGGAGGCGGAGGCACCGGAGTTTCGACGATGGAGGGATGTTTCAACCTACGGCGCGGAGGACGAGAGCATGGATCATCCTTCG ACCTGTGGGAGACCCGACTGGACCCGCCCGACCAGTTTCAACGACTAACATTTTCCCTCCGAGGAGGGTGGATCCTCAGGACTATTTCACCGGACCTAGC TTGAATGAATTGATCGAGCAGATCACTCAGGACGACCGCCCTGGCCCGGCTCCAGCTGCTGAATCGGCCATCGAGGCGATTCCGAGAGTGGAGATTCGGG AGGCACATTTGGCGGGGAATAATGACTATGATTCATGTCCGGTGTGTAAGGAAGAGTTTAAGGTTGGAGGTGAAGCTAGGGAGTTACCTTGCAAGCACAT TTACCATGATGAGTGTATCGTCCCTTGGCTGAGATTGCATAATTCTTGCCCGGTCTGTCGCAAGGAAATACCGGCTGTGAGCGGCAGCGAGGATGAAGAA GCAGACGAAGGTGGAGGAACGTGCTGGAGGTTGAGGAGGCAGCTAGCGTCGATGTGGCCGTTTGGTCGTCCTAGATATGCCAGAGTTATGCCTAATGAGT CTGTTCCTGCTAATGATAATCCTAATCCAAATGCTCCAAGGAGAGGTCGGAATTGA
AA sequence Show only first row Show all	>Lus10025612 pacid=23145051 polypeptide=Lus10025612 locus=Lus10025612.g ID=Lus10025612.BGIv1.0 annot-version=v1.0 MSLSPPRTRPSATSEENGSTRAFQLYWCFQCHRAVSIATPTNATTSQPATCPRCSGHFIVEINTNNNSGQRRPRLVVNFTEFDPSPEARLLEALSLVLDP PLMGTTAPLETGFPRGRDTWPRRRPTEDGIGSDLNVPTTGRRRHRSFDDGGMFQPTARRTRAWIILRPVGDPTGPARPVSTTNIFPPRRVDPQDYFTGPS LNELIEQITQDDRPGPAPAAESAIEAIPRVEIREAHLAGNNDYDSCPVCKEEFKVGGEARELPCKHIYHDECIVPWLRLHNSCPVCRKEIPAVSGSEDEE ADEGGGTCWRLRRQLASMWPFGRPRYARVMPNESVPANDNPNPNAPRRGRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60360			RING/U-box superfamily protein...		Lus10025612 [exp]	0	1
AT1G63310			unknown protein		Lus10008287 [exp]	1.4	0.9731
AT3G05620			Plant invertase/pectin methyle...		Lus10029868 [exp]	2.0	0.9645
AT1G63310			unknown protein		Lus10033253 [exp]	2.4	0.9621
					Lus10015565 [exp]	4.1	0.9322
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10019452 [exp]	5.7	0.9357
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10042397 [exp]	6.3	0.9524
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001844 [exp]	6.3	0.9509
AT4G16640			Matrixin family protein (.1)		Lus10004728 [exp]	6.9	0.9211
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10026276 [exp]	7.7	0.9169
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	8.1	0.9490

Compare expression of checked genes

Lus10025612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.