Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44835 359 / 2e-124 YbaK/aminoacyl-tRNA synthetase-associated domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028064 [exp] 581 / 0 AT1G44835 347 / 7e-120 YbaK/aminoacyl-tRNA synthetase-associated domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G175900 [exp] 428 / 4e-151 AT1G44835 377 / 2e-131 YbaK/aminoacyl-tRNA synthetase-associated domain (.1.2) Potri.002G085700 [exp] 87 / 2e-21 AT1G44835 0 / 1 YbaK/aminoacyl-tRNA synthetase-associated domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04073 [flax] [poplar] tRNA_edit Aminoacyl-tRNA editing domain
Representative CDS sequence Show only first row Show all	>Lus10025613 pacid=23144962 polypeptide=Lus10025613 locus=Lus10025613.g ID=Lus10025613.BGIv1.0 annot-version=v1.0 ATGGGTGTTACAAAGGAGCAGTTGATTGCACGATTGAAGGAGCTCGAAATAAAATTTGAGCAGTATGAACATCCTGCTGTTTTGACTGTAGAAGCCCAGG CAAAATATGTTGGGGACAAAGGGGGTGGACTGAGTAAAAATCTATTCTTGAAGGACAAGAAAAGTAGGTTCTACATTGTTTCTGCTCTTGCCAATACTAA AGTAGATCTGAAAGTTCTGTCTCAAAGGCTTGGTTTGGGGAAAGGAGGATTAAGAATGGCTCCTGAAGAAGCACTAGGCCAGATACTACAGGTTTCTCTA GGTTGTGTCACCCCATTTGCACTTGTAAATGAGTCAGCAAGAGATGTATCCCTGTTGTTGGACAAGGGATTCAAAAGCCAAGAGCACTGCTTCTTCCATC CGCTATCTAACGAAACATCAATATCTCTCAAAGCTAGTGCTCTAGACAAGTTTCTTGAATCAATTGGGAGAGAGCCCTCATACGTCGACCTTGAGGCTAA CCCCTCGGTAGGAAAGGATCAACCTCCAGATCTAGCTTCTCTTGTTCCATCGGGAACCTTCGATATACCTGATGCTCCTAGCGTCCCTTCACAAGGGAGA GAGAAGCCCCTCTTGGTCGAAAAGAAGTGTACGCCTGCTGCAGTGAAAGCTGCCAAGCCAAGCAGCACGGAAAAAAATGCAAAGGACAAAGAGTACAATT CAGCATCTCAACCGAATGCTTTTACGCAGTCTGATCTATTTGTGGAAGAGATACTGAATAAGACTGCAGAACTGATGCTCTCCGAAATAAGCACGGTATC TATTCGAACCTCTCTCATGCTCAACATGATACGTAACTCCTTTGAACTCAAACTGAATGAAACTTATCCCCTGCAGCTAACTGGGGATGTCGCAAAGCAA AAAGCCATTGCTGAGAGTATCAGAAAGCGTCTCACTCCAGATCTAGAAAATCTCACTGTGATATTTAAGAACACGGCCTACGCACAAGGGTTCTACGCTG GTAGTAACTGTCAATCGAAGCGTTTATGA
AA sequence Show only first row Show all	>Lus10025613 pacid=23144962 polypeptide=Lus10025613 locus=Lus10025613.g ID=Lus10025613.BGIv1.0 annot-version=v1.0 MGVTKEQLIARLKELEIKFEQYEHPAVLTVEAQAKYVGDKGGGLSKNLFLKDKKSRFYIVSALANTKVDLKVLSQRLGLGKGGLRMAPEEALGQILQVSL GCVTPFALVNESARDVSLLLDKGFKSQEHCFFHPLSNETSISLKASALDKFLESIGREPSYVDLEANPSVGKDQPPDLASLVPSGTFDIPDAPSVPSQGR EKPLLVEKKCTPAAVKAAKPSSTEKNAKDKEYNSASQPNAFTQSDLFVEEILNKTAELMLSEISTVSIRTSLMLNMIRNSFELKLNETYPLQLTGDVAKQ KAIAESIRKRLTPDLENLTVIFKNTAYAQGFYAGSNCQSKRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10025613 [exp]	0	1
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Lus10006202 [exp]	3.3	0.7455
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10028272 [exp]	4.9	0.8027
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	6.0	0.7946
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Lus10018144 [exp]	13.1	0.7896
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10004278 [exp]	13.1	0.7708
AT2G06090			Plant self-incompatibility pro...		Lus10016350 [exp]	14.1	0.7244
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033487 [exp]	14.5	0.7640
AT1G55205			unknown protein		Lus10032319 [exp]	17.0	0.7453
AT5G22840			Protein kinase superfamily pro...		Lus10020515 [exp]	17.7	0.7228
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10017988 [exp]	19.2	0.7028

Compare expression of checked genes

Lus10025613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.