Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77680 1013 / 0 Ribonuclease II/R family protein (.1) AT2G17510 297 / 1e-85 EMB2763 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) AT5G02250 84 / 3e-16 ATMTRNASEII, RNR1, EMB2730 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014833 [exp] 1739 / 0 AT1G77680 1033 / 0.0 Ribonuclease II/R family protein (.1) Lus10028065 [exp] 898 / 0 AT1G77680 551 / 1e-179 Ribonuclease II/R family protein (.1) Lus10009879 [exp] 609 / 0 AT1G77680 337 / 9e-107 Ribonuclease II/R family protein (.1) Lus10009880 [exp] 523 / 3e-177 AT1G77680 363 / 5e-117 Ribonuclease II/R family protein (.1) Lus10029500 [exp] 285 / 3e-81 AT2G17510 1543 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10039601 [exp] 86 / 1e-18 AT2G17510 249 / 2e-77 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10024387 [exp] 66 / 2e-10 AT5G02250 1066 / 0.0 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086400 [exp] 1212 / 0 AT1G77680 1062 / 0.0 Ribonuclease II/R family protein (.1) Potri.005G174800 [exp] 1186 / 0 AT1G77680 1078 / 0.0 Ribonuclease II/R family protein (.1) Potri.007G059100 [exp] 303 / 1e-87 AT2G17510 1546 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Potri.001G137401 [exp] 84 / 2e-18 AT1G77680 63 / 5e-12 Ribonuclease II/R family protein (.1) Potri.006G086200 [exp] 84 / 4e-16 AT5G02250 1085 / 0.0 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00773 [flax] [poplar] RNB RNB domain
Representative CDS sequence Show only first row Show all	>Lus10025614 pacid=23145113 polypeptide=Lus10025614 locus=Lus10025614.g ID=Lus10025614.BGIv1.0 annot-version=v1.0 ATGATGAAAGGAGGAGCACTGACGAGTGCGGTAGGATCGGTGGTGGTTGAAAGGGTTGAGGATGGATTTGGCGGCGGCGGCAATGAGAAGGAGAGGAAGA GGAATCGGCGCCGATCCAATCGGCCAACCAAGTCGAGTTCTGTTAATCCGCCGCCTGTTTGTAGCTCAGTGAATGAAGTAAAGGAGTTACCATCTCATGC TCATGCATCCAGTGATAACAACAAGAAGAAAATACGCAATGCAGCACAAGATTGCTCTTCGTCGAGGCAAATTGATTCAGAAGCTCCTTCCCCGGGCGAG CAAGTACTCCCCATAGAGTCAAATGTAGTTTTCAACTCTATGCCGATGATGCGTGATCAGAGTGAACACCTTGTGCCAGGTGATATTGGTGAATCATCAT CCCTTTCAATGTCATGCCCAGACCCAGTTCATGATGAAGGCATGCGTGCAAATGGTGGTTTGTGTATGACGCACCCCCGATTCGAAGGTCATCCACAAGG AAAAATATACAATCCGTACTGGTCAACGGAGGCTGTTAACGAGGCGTTGGAGAGAGGTGATGCGTTCAAATCATTGTTTCGGGTAAATGCACACAATAGG CTCGAGGCATACTGCAAAGTTGATGGAGTTCCAACAGATATTCTCATAAGTGGATATGCTGCACAGAACCGAGCTTTAGAAGGTGATACTGTCGTCATCA AGATTGATCCTTTGTATTCATGGGCCAGGATGAAAGGGTCAAATGGACCCTCTAACAGATGTGAACCGGTTGAAGATTCTAAAATACATCACAGTGATTC AGTTGATGCAATTGGAAAGGGTAAAGCTGAGATGGATGAATTTGGTGCTTCCACGGTTTCTGTTAGCTCGATGCCCTCACAAGAGTTTTCTCGTAATGAA GAGAATGGGTCACTGGCTTGTGACTTTGTTAGTGGCTATAATAGTAGTGTTGAACCTTTTGTTCGACAAAACGGAGTTGAGAACTCTACAATGCAAGTTG AGAATGCATTGGAGAAATTGTGTACGTTCATGAGTTTCTATCCATCAAAACGTCCTACTGGGAAAGTTGTAGCAATCATTGAGAAGTCTCCCCGGCGAGA TGCTATTGTGGGTTTCCTCAATTCCAAGCAGTGGTTTTACTACAGGGAAGGATATGGAAAGGACCCTAGAAAGAATACAAGTCCTTTACCCATATATGAC AATGAGTACATCCAAGTGACTCCTACCGACCCCAAGTTCCCAAAACTGTCTGTCCGTGTGGAGAGTTTACCTAGTTGCATCAAGAAGAGAATGAAGGAGG GAGATAAAACACTGGACTCTGACTTAGTGGCTGCACATATTGAGAATTGGACTGAAGAAAGCCCTTCTCCACAAGCATGCATTACTCGTGTTTTTGGTCG CGGAAGTGAAATGGAGCCTCAGATTAATGCAATATTATACGAGAATGCAATTTGCGTTTCTGACTTCTCTCCAGAGTCACTTTTGTGCCTTCCTGGGAAG GCATGGGAGATACCAGAAGAGGAAATCCGCAACAGAATGGACCTTAGGCATTTGTGCACTTTCACAATTGATCCTTCAACTGCCACTGATTTAGATGACG CTCTATCAGTTGAAAGTTTAGGTGGTGAAAGTGTTAGAGTAGGGGTTCACATTGCTGATGCATCGTATTTTGTTTCACCCGGCACATCCTTGGATCTGGA AGCTCAAAATCGGTCAACAAGTGTCTATATGGTGCGAGGTAAGATACCAATGTTGCCTCCAGTTTTATCTGAGAATCTTGGCTCCCTCAATCCTGGAGTA AATAGGCTTGCATTCTCAATTTTCTGGGACTTCAACAGTAATGGTGATGTCATTGATCGTTGGATTGGCCGGACTGTCATGAAATCTAGTTGCAAACTGT CATATGAACATGCTCAGAAAATCATTGATGGTGATACTTGGAACAGAAATAGTGAAGGCATGCCACAATTGTACGGTAAATTTGAATGCAACGACATCCT TAAGTCTGTCAAGGCTCTTCACAGACTTTCAAAGGTATTAAGGAAGAGGAGGTTTGATGATGGGGCCCTACAACTGGAAAGTTCCAAGGTTGTCTTTCTA TTTGACGAGTATGGCATTCCATATGACTGTACCTTCGGTGAACAAAAGGAATCAAATTCACTTGTGGAGGAGTTCATGCTTTTGGCTAATACGACAGCGG CAGAGATCATAAGTAGAGCTTTCCCCGAAAGCGCATTATTACGAAGACATCCTGAACCAAATCTGCGCAAGCTAAGAGAACTCGAAACATTTTGTAGCAA GCATGGTTTTGTTTTGGATACTTCTTCGTCTGGTAAGCTCCATAGATCACTGGAGTGGATCCGGGAGACACTTAAAGGTGATACAATGTTTATTGATATT CTCGTCACTTATGCTACAAAGTCGATGCAGCTGGCAACCTACTTCTGTAGTGGTGATCTGAGAAACAATGTCAATGACTGGGGTCATTATGCTTTGGCTG TACCTCTATACACTCATTTTACTTCACCGTTACGGCGTTATTCTGACATCATAGTTCATCGTCTGCTGAGTGCTGTGCTCGAAGCTGAAAAATGTTTCTT GGATCGCTGCAAAACGTCACGCGTACTTTTAAGAAATGAGGATATAAGGTGTTTCACTGGGCTTAACTTCGACAGAGATGCAGCTGAATCATTGGAAGGG CGGGAAGCATTGTTATCTGCAGCTCTAAAATATAGAATCCCTTCTGCAGATTTACTTGCAGATCTAGCAGCGCATTGCAACGATAGAAAAATGGCTAGCA GGCATGTCAAAGATTCCTGTAATAAGCTCTACATGTGGATGTTACTGAAGAAAAAGAAGGTTTTGTTGTCGGAAGCTAGAGTTGTAGGTCTCGGACCAAG GTTCATGTCTGTTTACATTCATAAACTTGCTATGGAACGCCGTATACACTATGATGAAGTCGAGGGGTTGTCAGCAGAATGGCTAGAAGCAACTTCAACC TTGGTGCTTAGCATATGCACCAACAAACGCTCTTCCAGAAGAATAGGTTCCAATTTCAGGAGGTCACTCAGCGAAGTGGCTTGGGTAGTAAATCCTTGTG ACACAGAACTAGAACCTGCTCCGGCCTCCCAAAGACTTGATAGCGGTAGGATTTCAAGATTCGAAATTGATCCAGCAGTTTCTCCTCTTACTATACGTAT CCTCTCAACAATCCCGGTAGCTCTTCATGCACTCGGTGGTGATGATGGTCCCCTTGACATTGGGGTTAGCTTGTTCATCAGCTCGTATTTTAGCTGA
AA sequence Show only first row Show all	>Lus10025614 pacid=23145113 polypeptide=Lus10025614 locus=Lus10025614.g ID=Lus10025614.BGIv1.0 annot-version=v1.0 MMKGGALTSAVGSVVVERVEDGFGGGGNEKERKRNRRRSNRPTKSSSVNPPPVCSSVNEVKELPSHAHASSDNNKKKIRNAAQDCSSSRQIDSEAPSPGE QVLPIESNVVFNSMPMMRDQSEHLVPGDIGESSSLSMSCPDPVHDEGMRANGGLCMTHPRFEGHPQGKIYNPYWSTEAVNEALERGDAFKSLFRVNAHNR LEAYCKVDGVPTDILISGYAAQNRALEGDTVVIKIDPLYSWARMKGSNGPSNRCEPVEDSKIHHSDSVDAIGKGKAEMDEFGASTVSVSSMPSQEFSRNE ENGSLACDFVSGYNSSVEPFVRQNGVENSTMQVENALEKLCTFMSFYPSKRPTGKVVAIIEKSPRRDAIVGFLNSKQWFYYREGYGKDPRKNTSPLPIYD NEYIQVTPTDPKFPKLSVRVESLPSCIKKRMKEGDKTLDSDLVAAHIENWTEESPSPQACITRVFGRGSEMEPQINAILYENAICVSDFSPESLLCLPGK AWEIPEEEIRNRMDLRHLCTFTIDPSTATDLDDALSVESLGGESVRVGVHIADASYFVSPGTSLDLEAQNRSTSVYMVRGKIPMLPPVLSENLGSLNPGV NRLAFSIFWDFNSNGDVIDRWIGRTVMKSSCKLSYEHAQKIIDGDTWNRNSEGMPQLYGKFECNDILKSVKALHRLSKVLRKRRFDDGALQLESSKVVFL FDEYGIPYDCTFGEQKESNSLVEEFMLLANTTAAEIISRAFPESALLRRHPEPNLRKLRELETFCSKHGFVLDTSSSGKLHRSLEWIRETLKGDTMFIDI LVTYATKSMQLATYFCSGDLRNNVNDWGHYALAVPLYTHFTSPLRRYSDIIVHRLLSAVLEAEKCFLDRCKTSRVLLRNEDIRCFTGLNFDRDAAESLEG REALLSAALKYRIPSADLLADLAAHCNDRKMASRHVKDSCNKLYMWMLLKKKKVLLSEARVVGLGPRFMSVYIHKLAMERRIHYDEVEGLSAEWLEATST LVLSICTNKRSSRRIGSNFRRSLSEVAWVVNPCDTELEPAPASQRLDSGRISRFEIDPAVSPLTIRILSTIPVALHALGGDDGPLDIGVSLFISSYFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77680			Ribonuclease II/R family prote...		Lus10025614 [exp]	0	1
AT1G77680			Ribonuclease II/R family prote...		Lus10014833 [exp]	1.0	0.8787
AT1G77680			Ribonuclease II/R family prote...		Lus10028065 [exp]	4.0	0.8318
AT1G31730			Adaptin family protein (.1)		Lus10035683 [exp]	8.1	0.8149
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10016053 [exp]	9.1	0.7013
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013803 [exp]	12.2	0.8145
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000272 [exp]	14.7	0.8051
AT4G01210			glycosyl transferase family 1 ...		Lus10002154 [exp]	15.5	0.7696
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10026516 [exp]	18.8	0.8030
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	19.0	0.7895
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10025509 [exp]	19.3	0.7941

Compare expression of checked genes

Lus10025614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.