Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33390 955 / 0 ATFAS4 FASCIATED STEM 4, RNA helicase family protein (.1) AT2G35920 193 / 4e-50 RNA helicase family protein (.1) AT1G32490 172 / 2e-43 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 156 / 3e-38 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT2G47250 154 / 4e-38 RNA helicase family protein (.1) AT3G26560 154 / 1e-37 ATP-dependent RNA helicase, putative (.1) AT5G13010 149 / 4e-36 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT3G62310 147 / 4e-36 RNA helicase family protein (.1) AT1G26370 145 / 1e-35 RID1 RNA helicase family protein (.1) AT1G27900 144 / 5e-35 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028066 [exp] 2028 / 0 AT1G33390 1148 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1) Lus10013479 [exp] 195 / 2e-50 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007938 [exp] 191 / 6e-49 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009022 [exp] 189 / 8e-49 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009660 [exp] 171 / 3e-43 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 155 / 9e-39 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10031647 [exp] 156 / 2e-38 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10015812 [exp] 153 / 5e-38 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 152 / 1e-37 AT4G18465 1033 / 0.0 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201400 [exp] 1177 / 0 AT1G33390 1056 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1) Potri.015G008700 [exp] 160 / 1e-39 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.008G096800 [exp] 153 / 5e-38 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.012G034200 [exp] 154 / 9e-38 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G024400 [exp] 152 / 6e-37 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.010G057200 [exp] 149 / 9e-37 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 147 / 6e-36 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.010G172500 [exp] 148 / 7e-36 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.004G052700 [exp] 145 / 2e-35 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 142 / 2e-34 AT3G62310 1276 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10025616 pacid=23145112 polypeptide=Lus10025616 locus=Lus10025616.g ID=Lus10025616.BGIv1.0 annot-version=v1.0 ATGAAGATGGACGATGACAGCAATGCGCTTATCATGCCTGCTCGAAAAAATAAGAGGAAATCCCAGAATAAGGAGAGTGAAGCAGCCAAGAGGGCGAAAA CCGTCAAGTTGAGCAAATCTCAGAAGAGAAAGTTGAAGAAGTTGGAGGAGGAGAAGGAAAGGGCTGGTATGCTTTTGGAGAGTGTGAAGACCTTGGAGAA GTACAAGCTCCCCGAGGAAGCATTTGATCTTTTACGGTCTTCAAAAGACATATGTCGGGCTGAAACTGCCAAGGAAAAACGTAGAATGGCAGTACAGTTT TCGAAAGCAGGTTTAGAAGATCCAAATACTTTTCAACCTTTTAGGACGGTGGGTGAACATCCTGCATCCGACTCTGAAACAGAATCAACAGAAGAATTGT CGTCCCATGACATCAACAAGGGCTTGGGAGGAGAAGCTCCAAAATGTAACGAGTCTGTCTCACTGGTTTTTCATCAACAAACAGTCAAAGGAAATAAACT TCGTACTGATGTTATCCCTGTTTCCGAAGTTTCTGATGAGAAATATTCTGAAATGGATGATGACCAGAAGCCAACTCCTGGAAATGCAAGAGACTATTCA CCTTCTAAACATGATGGTGCTGTGGGAGAGGGCCTCAAATTGATGAATAAGTCAGAAGGAAGCTCTACTCTTCCATTGGCCAGCTCTAGCAAGTTTCATG GTTGTTCAACGGAACGGCAACATACTATCCCGACAGTGGTGCATGTAAAAAGGCCCGATGAAGTGGAAGCAAACAGGAAAGATCTTCCCATTATTATGAT GGAGCAGGAGATAATGGAAGCCATCAATGAAAATCTCACAGTTATTATATGTGGAGAAACTGGGTGTGGTAAAACTACTCAAGTTCCTCAGTTCCTATAT GAAGCAGGTTTTGGGTCTAAGCAATCTGCTGTTCATGGAGGTGTTATTGGTGTTACTCAACCACGTCGTGTTGCTGTCCTTGCCACTGCCAGACGTGTGG CATTTGAACTTGGTGTTCGTCTTGGTAAAGAGGTTGGATTCCAAGTTAGACATGACAAGAGGATTGGAGACAGTTCTGCTATCAAGTTTATGACTGACGG AATTTTACTTCGAGAAGTTCAGAATGATTTCTTACTGAGGCGTTACTCGGTCCTTGTACTGGACGAGGCTCATGAGAGAAGCGTTAATACTGACATACTT ATCGGGATGCTGTCTCGTGTCATTCAGCTTCGTCAGAAGAAATACCAGGACCAGCAAGCAATGATTGTTTCAGGACAAAAGATAAGCCCCGAAAGTATGG TATTTCCTCTTAAACTTGTGTTGATGAGTGCCACCATGAGAGTAGAGGACTTTATCTCTGGTAAAAGGTTGTTTCGCAGCCCTCCCCCTGTTGTAGAAGT TCCTACCAGACAGTTTCCCGTGAGCGTACATTTCTCAAAGAGAACAGAAGAAGTTGATTATATCGGTCAGGCTTTCAAAAAGGTTAAGGCTATCCATCAG AAGCTGCCACAAGGAGGCATCCTTGACATCAATGAGGCATTTGATTTTCCAGAGAATCCAGATGAGGATCAATCTGACTTTAGTGGGGATGAGTCGGATT TTACTTCTCATTCTGAATCAGAGAGTGACCTTGAAGTTGATGATCTAGTAGATGACATATCACTGCAAAATGACAATGGCGTTATAGATAGTCTGAGGGA AGACAATAGTCTTGTATCGTTAAAAGCTGCTTTTGAAGCTTTGGGCGGAAAGACTCCGTCCGATTCTAATTCTGAAGGACTACAGAATGTTTCTACAACA GGGGACTCCATAGAGGTACCTGGGAAAAGTTCATCGCCTGGTCCAGTTCGTGTCCTTCCTCTTTATGCTATGCTTCCTGCGGCAGCACAGCTCCGTATAT TCGAGGAGATGAAGGAAGGGGAGCGGCTCATTGTCGTTGCTACGAATGTTGCCGAAACTTCTCTAACCATTCCAGGCATAAAGTATGTGGTTGATACCGG ACGAGAAAAGGTGAAGACATACAACCCTTCTAACGGCATGGAGTCCTATGAAGTTCAGTGGATAAGTAAAGCATCAGCTGCTCAACGTGCAGGAAGAGCT GGAAGAACTGGACCTGGACACTGTTATCGTCTCTACACAGCAGCAGCCTTTGGTAAACTTCCAGATTTCTCTTGTGCCGAAATATCTAAAGTGCCGGTGG ATAGCATTGTTCTGATCCTGAAATCAATGAACATTGACAAGGTTCATAATTTTCCATTCCCTACTCCTCCGGAGACCACTGCACTGCTAGAAGCAGAACG ATGTTTGAAAACTTTGGAAGCACTTGAGAACAATGGTAGGCTGACATCGTTGGGGAAAGCTATGGCTTGCTATCCCATGAGTCCTCGACATTCTCGTATG CTCTTAACAGTTATCAACACTATGAGGAAGGTGAAAAGCTACGACCGAGCAAATCTGGTCCTTGCACACGCAGTTGCAGCAGCTGCAGCATTGAGCGTCT CCAATCCTTTTCAGTTCCAGTTCGGCACCAATCAAATCAACAGCAGCGGCACAGATCAGGATAAAAAATCCGATGGTGACTTGAACGGTGACGGAAACAT GTCGAAGGAAGAAAAAAGACGGAAGAAGCAACTAAAAGAAACCGCTAAAGCAACCCGTGCTAAATTCTCTAATCCCACCAGCGATGCTCTCACCGTAGCT TATGCATTGAAGTCTTTTGAACTCTCGGAAACTCCTGCCAAGTTCTGCAGTGAATACTTATTGCATTTTAAGACAATGGAAGAAATGAGCAAGCTAAGAA AGCAGCTTCTGCAACTTGTTTTCTCCCAGAGTGCTAGTTTCGCCTCCGATCATGATTTCGCGTGGGTTCACGGTACATTGGAACAAGTCGAACTCGCTTG GAGGACTCCATCCAATAAGAATCCCCTTTTGCTGAACGAGGAAGAGTTTCTGCGTGAAGCTATATGTGCTGGTTGGGCTGATAGGGTTGCCAAAAGGATA CGACATAACTCGAAGCCGTCGGAAGGAGATTGGAAAGTTTCGGCACCTCGGTACAAAGCTTGCATGGTTGAAGAGACCGTCTTCCTCCATCGATATTCGT CTCTTTCGAGTTCATCGCCCGAGTTCTTGGTGTACAGTGAATTGCTACAGACTAAGCGGCCATACATGCACGGATCAACGAGCGTGAAACCCGAGTGGCT TGTCAAGCACGCTAGATCCATGTGCAGTTTTTCGACCGTGGACGATCCAAAGCCTTACTACGACCCAAAAACCGACCAAGTGTTCAACTGGGTGAGTCCG ACTTTCGGGCCTCATCTTTGGCAGCTTCCATTGCAGGCAGTACCTATAAGCAGCGAAGCCGATAGGGTAAAGGTATTTGCTTGTGCCTTGCTGGAAGGAC ATGTCTTGCCGTGTTTGAGATCGGTTAGGAAGATGATGGCTGCGCGTCCTAGTACGATTCTCGAGAAGGAAGCAACAGGGGATCGACGTGTAGGTAATCT CCTGTTTAGAATGAAGGCGAGAAATATAGACGGTTGTAAGAGATTGAGAGAGGTTTGGAAAGAACATCCTATGGAATTGCATGGGGAAGTAATGGGGTGG TTTAATAAGAGCTTCCATGGTCAGTTTGAACAGCTTTGGTCTCAGATGCTTGCTGAGATCCAACTGACGCCGCAAGATCGCGGTCTGCCCCGAAAGTCGA AGAAATAA
AA sequence Show only first row Show all	>Lus10025616 pacid=23145112 polypeptide=Lus10025616 locus=Lus10025616.g ID=Lus10025616.BGIv1.0 annot-version=v1.0 MKMDDDSNALIMPARKNKRKSQNKESEAAKRAKTVKLSKSQKRKLKKLEEEKERAGMLLESVKTLEKYKLPEEAFDLLRSSKDICRAETAKEKRRMAVQF SKAGLEDPNTFQPFRTVGEHPASDSETESTEELSSHDINKGLGGEAPKCNESVSLVFHQQTVKGNKLRTDVIPVSEVSDEKYSEMDDDQKPTPGNARDYS PSKHDGAVGEGLKLMNKSEGSSTLPLASSSKFHGCSTERQHTIPTVVHVKRPDEVEANRKDLPIIMMEQEIMEAINENLTVIICGETGCGKTTQVPQFLY EAGFGSKQSAVHGGVIGVTQPRRVAVLATARRVAFELGVRLGKEVGFQVRHDKRIGDSSAIKFMTDGILLREVQNDFLLRRYSVLVLDEAHERSVNTDIL IGMLSRVIQLRQKKYQDQQAMIVSGQKISPESMVFPLKLVLMSATMRVEDFISGKRLFRSPPPVVEVPTRQFPVSVHFSKRTEEVDYIGQAFKKVKAIHQ KLPQGGILDINEAFDFPENPDEDQSDFSGDESDFTSHSESESDLEVDDLVDDISLQNDNGVIDSLREDNSLVSLKAAFEALGGKTPSDSNSEGLQNVSTT GDSIEVPGKSSSPGPVRVLPLYAMLPAAAQLRIFEEMKEGERLIVVATNVAETSLTIPGIKYVVDTGREKVKTYNPSNGMESYEVQWISKASAAQRAGRA GRTGPGHCYRLYTAAAFGKLPDFSCAEISKVPVDSIVLILKSMNIDKVHNFPFPTPPETTALLEAERCLKTLEALENNGRLTSLGKAMACYPMSPRHSRM LLTVINTMRKVKSYDRANLVLAHAVAAAAALSVSNPFQFQFGTNQINSSGTDQDKKSDGDLNGDGNMSKEEKRRKKQLKETAKATRAKFSNPTSDALTVA YALKSFELSETPAKFCSEYLLHFKTMEEMSKLRKQLLQLVFSQSASFASDHDFAWVHGTLEQVELAWRTPSNKNPLLLNEEEFLREAICAGWADRVAKRI RHNSKPSEGDWKVSAPRYKACMVEETVFLHRYSSLSSSSPEFLVYSELLQTKRPYMHGSTSVKPEWLVKHARSMCSFSTVDDPKPYYDPKTDQVFNWVSP TFGPHLWQLPLQAVPISSEADRVKVFACALLEGHVLPCLRSVRKMMAARPSTILEKEATGDRRVGNLLFRMKARNIDGCKRLREVWKEHPMELHGEVMGW FNKSFHGQFEQLWSQMLAEIQLTPQDRGLPRKSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10025616 [exp]	0	1
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10028066 [exp]	1.0	0.9528
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	2.8	0.9322
AT4G32910			unknown protein		Lus10038723 [exp]	3.9	0.9261
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	5.7	0.9251
AT4G38440		IYO	MINIYO, unknown protein		Lus10025099 [exp]	6.2	0.9008
AT3G57000			nucleolar essential protein-re...		Lus10035220 [exp]	7.3	0.8826
AT5G55600			agenet domain-containing prote...		Lus10003906 [exp]	7.9	0.8583
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	8.1	0.8881
AT4G28200			unknown protein		Lus10004616 [exp]	9.0	0.9117
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10037989 [exp]	13.2	0.9167

Compare expression of checked genes

Lus10025616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.