Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35370 431 / 1e-141 S-locus lectin protein kinase family protein (.1) AT4G32300 201 / 2e-55 SD2-5 S-domain-2 5 (.1) AT1G61480 101 / 2e-22 S-locus lectin protein kinase family protein (.1) AT1G11330 100 / 1e-21 S-locus lectin protein kinase family protein (.1.2) AT1G61500 99 / 2e-21 S-locus lectin protein kinase family protein (.1) AT1G11300 99 / 2e-21 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61370 94 / 6e-20 S-locus lectin protein kinase family protein (.1) AT1G61360 93 / 2e-19 S-locus lectin protein kinase family protein (.1.2) AT4G00340 92 / 3e-19 RLK4 receptor-like protein kinase 4 (.1) AT4G21390 91 / 9e-19 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028067 [exp] 900 / 0 AT5G35370 844 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10000249 [exp] 191 / 4e-52 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10002917 [exp] 186 / 3e-50 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 177 / 2e-47 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10031230 [exp] 105 / 2e-23 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10013245 [exp] 105 / 4e-23 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10025512 [exp] 103 / 5e-23 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 101 / 3e-22 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031805 [exp] 97 / 1e-20 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086500 [exp] 540 / 0 AT5G35370 952 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G013797 [exp] 394 / 3e-127 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.006G254600 [exp] 184 / 1e-49 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.018G027300 [exp] 177 / 2e-47 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.004G061900 [exp] 122 / 9e-29 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.014G086900 [exp] 117 / 3e-27 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.T084500 [exp] 110 / 4e-25 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1) Potri.013G121000 [exp] 107 / 6e-24 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027400 [exp] 106 / 7e-24 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038000 [exp] 106 / 1e-23 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10025617 pacid=23144986 polypeptide=Lus10025617 locus=Lus10025617.g ID=Lus10025617.BGIv1.0 annot-version=v1.0 ATGGGAACTCTTTCACTTTCCTCTGCTTTCCCTCTAATGGGAACTCTTCCACTTTCCTCTGTTTTCCCTCTCTTCTTCTTCTTTCACTGTTCACTTCTCG TCTCTTCAGCTCCTCCTTCCAAGGAGTTCATTTCCCCCAACTTCACAGCAACCAACCTCCGATTTGTCGACAACTCCGGAGCTTTCCTCTTCTCCAAGAA TGGCACCTTCAAAGCTGCCATCTTCAACCCTGGCGGTCAACAGTCCAGATTCTACCTCTGCGTCATCCACTCTGCTTCCGGTACCGTCGTCTGGTCGGCG AATCGCGATTCCCCGATCTCCAATTCCGGCACCATGCACATCACCGGAGACGGAATTACCGTCTCCGACCACCAGGGCCTTCCGAAATGGTCGACTCCGT CCACCATTTCGAAATCATCTGTTTCGGGGTTACACCTGACCGAGTCGGGTAACCTCAGGTTGCTCGACCGGTCGAACGTTTCCGTATGGGAAACGTTCGA AAACCCGACGGATACAATCATCGCCGGACAGTTACTTCGGAGTGGGAAAATGTTGTCCGGCTCTGTTTCTGGGGGCGATTTTTCGACAGGGGACTACCGG CTCGGGTTTGCAGACTCGGACGCCGTGCTCACGTGGCGGAAGAAGACGTACTGGAAGCTGTCGATGGATCCTAAGGCTTACAAAAACTCGAATCACGCTG TGGATTCGATGATGGTGAACGGAACAGGGGTTTTCTTATTCGGCGGGAACGGGTCGAACCTTGTGATTCAGGTGGCTCTGCCTCCGGCAGAGTTTCGAGT CGCGAAGCTGTCCCCGTCAGGACAGCTCGTCGTAAGCAGTTTCTCCAACGGGATGAAGGAGGAGCTCAACGGACCGAGTAACGTCTGTCGAATTCCGTTC ATTTGCAGAAAAATGGGATGGTGTTCTGTTTCTTCAGGGGACAATCCGATTTGCCAATGTCCGTCAGGTTTCCGTCCAGCCAACGATGCCAAACGAAGTA GCAATAGTAATTCCAATTCGTTCGGTGGATGCATACCCAGCGACGGTTCGTCGCTGGTACAATCCTGCGAGAATTCGACCTCGAATCCATCGTCATATGT AAGCATCGGGGACAGTACGGATTACTTCGCCCTTGACTTCTCCCAGCCGATGAACTTTGCAGTGAACTTATCAGTCTGTCAGGATTTCTGCACAGAGGAT TGTTCTTGCTTGGGGATCTTCTACCACAATTCGTCCGGTTCGTGCTACTCAGTCAAGGATGATCTCGGTTCCGTCATGTCAAATCGGGATCCCCAAAATC ATCAAGTGGGATTCATCAAGGTTCTGCAATCAGCCAATACAAAAGGCAATGAAGAATTAGTCAACGAAGGGAAGAAGCATCCGATTCCGTTGACCGCAAT CATTCTCTTACCCTGCATTACGTTCATAATCATTTTCCCCACAGCTTTCCTACTATGGAGAAGGAGGAAGGTTTCGAAACAACTGAAACGAAAGCTGAGC GACGCGGAAGATTTGTATTCATCCGAAGAAGAGCTGGATGCATTCTACATCCCAGGGTTACCGCTACGGTTCGATTTCGAGGAGCTCAAGGAAGCAACCG AGAATTTCAAGATTCAGATCGGGTCGGGCGGGTTCGGATCGGTGTACAAGGGAACCCTGCCGGATAAGTCCGATGTTGCGGTGAAGAAGATAACCAATGT TGGGATTCAGGGGAAGAGAGATTTCTGCACTGAGATAGCATAA
AA sequence Show only first row Show all	>Lus10025617 pacid=23144986 polypeptide=Lus10025617 locus=Lus10025617.g ID=Lus10025617.BGIv1.0 annot-version=v1.0 MGTLSLSSAFPLMGTLPLSSVFPLFFFFHCSLLVSSAPPSKEFISPNFTATNLRFVDNSGAFLFSKNGTFKAAIFNPGGQQSRFYLCVIHSASGTVVWSA NRDSPISNSGTMHITGDGITVSDHQGLPKWSTPSTISKSSVSGLHLTESGNLRLLDRSNVSVWETFENPTDTIIAGQLLRSGKMLSGSVSGGDFSTGDYR LGFADSDAVLTWRKKTYWKLSMDPKAYKNSNHAVDSMMVNGTGVFLFGGNGSNLVIQVALPPAEFRVAKLSPSGQLVVSSFSNGMKEELNGPSNVCRIPF ICRKMGWCSVSSGDNPICQCPSGFRPANDAKRSSNSNSNSFGGCIPSDGSSLVQSCENSTSNPSSYVSIGDSTDYFALDFSQPMNFAVNLSVCQDFCTED CSCLGIFYHNSSGSCYSVKDDLGSVMSNRDPQNHQVGFIKVLQSANTKGNEELVNEGKKHPIPLTAIILLPCITFIIIFPTAFLLWRRRKVSKQLKRKLS DAEDLYSSEEELDAFYIPGLPLRFDFEELKEATENFKIQIGSGGFGSVYKGTLPDKSDVAVKKITNVGIQGKRDFCTEIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35370			S-locus lectin protein kinase ...		Lus10025617 [exp]	0	1
AT5G35370			S-locus lectin protein kinase ...		Lus10025618 [exp]	2.2	0.9355
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	11.2	0.9089
AT2G14210	MADS	AGL44, ANR1	ARABIDOPSIS NITRATE REGULATED ...		Lus10028214 [exp]	11.7	0.9035
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012478 [exp]	12.5	0.8602
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10033533 [exp]	16.7	0.9006
AT3G47570			Leucine-rich repeat protein ki...		Lus10010199 [exp]	19.0	0.8911
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	19.9	0.9028
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	21.5	0.8978
AT5G05340			Peroxidase superfamily protein...		Lus10000346 [exp]	22.1	0.8535
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	23.6	0.9025

Compare expression of checked genes

Lus10025617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.