Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35370 249 / 2e-77 S-locus lectin protein kinase family protein (.1) AT4G32300 120 / 3e-31 SD2-5 S-domain-2 5 (.1) AT1G34300 101 / 1e-24 lectin protein kinase family protein (.1) AT5G24080 100 / 1e-24 Protein kinase superfamily protein (.1) AT2G19130 97 / 5e-23 S-locus lectin protein kinase family protein (.1) AT5G20050 93 / 7e-22 Protein kinase superfamily protein (.1) AT4G00340 89 / 2e-20 RLK4 receptor-like protein kinase 4 (.1) AT1G53430 85 / 5e-19 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 85 / 5e-19 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 85 / 6e-19 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028067 [exp] 211 / 2e-63 AT5G35370 844 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034193 [exp] 108 / 1e-29 AT4G32300 202 / 6e-61 S-domain-2 5 (.1) Lus10000249 [exp] 113 / 9e-29 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10002917 [exp] 112 / 1e-28 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 105 / 6e-26 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10039732 [exp] 103 / 3e-25 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013659 [exp] 96 / 5e-24 AT5G20050 244 / 8e-79 Protein kinase superfamily protein (.1) Lus10039762 [exp] 99 / 8e-24 AT2G19130 621 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 99 / 8e-24 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086500 [exp] 244 / 6e-76 AT5G35370 952 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G013797 [exp] 193 / 5e-57 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.006G254600 [exp] 119 / 5e-31 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.018G027300 [exp] 117 / 4e-30 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.018G070800 [exp] 106 / 1e-26 AT5G20050 516 / 0.0 Protein kinase superfamily protein (.1) Potri.015G026300 [exp] 104 / 8e-26 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.019G119200 [exp] 100 / 4e-24 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 98 / 2e-23 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G115800 [exp] 96 / 7e-23 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.013G149500 [exp] 96 / 8e-23 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025618 pacid=23144947 polypeptide=Lus10025618 locus=Lus10025618.g ID=Lus10025618.BGIv1.0 annot-version=v1.0 ATGAGGGGGACACGCGGGTATCTGGCTCCGGAATGGCTGACGAATTCGGCCATCACAGAGAAGACCGACGTGTATAGCTACGGGATGGTGCTGCTGGAGC TCGTCAGCGGGAGGAAGAACTGCTCGATGGTGAGATCTGCCAGCCACAGCATGGACGACAGCAGCGGCGGAGGAGGAGGAGATCAGACCGGCGGTGGAGG ACAGCAGTCCTCTACGTCATCGCAGTTTGCGATGATGGTGTACTTCCCACTGTTTGCGCTGGAGATGCACGAACAGGGGAAGTACATGGAGCTGGCGGAC CCTAGGTTAGAAGGCCGGGCGGGGAGAGAAGAGGTGGAGAAGTTGGTCCGGATCGCGCTGTGTTGCGTGCACGAGGAGCCCTGTTTAAGGCCCAGTATGG TGACGGTGGTCGGGATGCTTGAAGGAGGGATTCCGCTCGGTCAACCCCGAATGGAATCCCTCAATTTCTTGCGATTTTACGGCCGTAGATTCGCTGAGTC TTCGATGATCGAGGAAGCTGAGGATGGGATCGAGCAGAGGGAAGCTTTACTGAATACAAGGAATGATCAGTATACTTCAACGGGTAGTAACGTTTCGGAC TTGGGTTGCGTTCCTCTGTCTTTTATTTCTTCGCAACAGATTTCAGGTCCAAGATAG
AA sequence Show only first row Show all	>Lus10025618 pacid=23144947 polypeptide=Lus10025618 locus=Lus10025618.g ID=Lus10025618.BGIv1.0 annot-version=v1.0 MRGTRGYLAPEWLTNSAITEKTDVYSYGMVLLELVSGRKNCSMVRSASHSMDDSSGGGGGDQTGGGGQQSSTSSQFAMMVYFPLFALEMHEQGKYMELAD PRLEGRAGREEVEKLVRIALCCVHEEPCLRPSMVTVVGMLEGGIPLGQPRMESLNFLRFYGRRFAESSMIEEAEDGIEQREALLNTRNDQYTSTGSNVSD LGCVPLSFISSQQISGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35370			S-locus lectin protein kinase ...		Lus10025618 [exp]	0	1
AT5G35370			S-locus lectin protein kinase ...		Lus10025617 [exp]	2.2	0.9355
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	3.3	0.9435
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10014801 [exp]	5.3	0.9327
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	5.8	0.9428
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10015252 [exp]	6.6	0.9233
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	7.9	0.9377
AT3G62270			HCO3- transporter family (.1)		Lus10009995 [exp]	8.1	0.8918
AT2G27430			ARM repeat superfamily protein...		Lus10001881 [exp]	8.8	0.9130
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	10.6	0.9375
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	11.5	0.9219

Compare expression of checked genes

Lus10025618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.