Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08640 349 / 4e-120 ATFLS1, FLS flavonol synthase 1 (.1.2) AT4G22880 293 / 6e-98 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT5G63590 289 / 7e-97 ATFLS3, FLS3, FLS flavonol synthase 3 (.1) AT5G63600 253 / 1e-82 ATFLS5, FLS5 flavonol synthase 5 (.1.2) AT2G38240 244 / 9e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 242 / 1e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 234 / 5e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G43935 229 / 2e-73 ATFLS6, FLS6 flavonol synthase 6 (.1) AT4G16330 219 / 7e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G63595 214 / 5e-68 ATFLS4, FLS4 flavonol synthase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028068 [exp] 323 / 8e-110 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10025620 [exp] 318 / 1e-107 AT5G08640 424 / 2e-149 flavonol synthase 1 (.1.2) Lus10006709 [exp] 272 / 3e-88 AT4G22880 573 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10014134 [exp] 269 / 5e-88 AT4G22880 559 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10004808 [exp] 238 / 3e-76 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 234 / 2e-74 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10037292 [exp] 228 / 6e-72 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10006518 [exp] 223 / 5e-70 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004387 [exp] 213 / 4e-66 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014454 [exp] 341 / 5e-117 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.002G086700 [exp] 318 / 4e-108 AT5G08640 432 / 9e-153 flavonol synthase 1 (.1.2) Potri.004G139600 [exp] 315 / 1e-106 AT5G08640 470 / 7e-168 flavonol synthase 1 (.1.2) Potri.004G139700 [exp] 312 / 2e-105 AT5G08640 446 / 3e-158 flavonol synthase 1 (.1.2) Potri.001G113100 [exp] 278 / 7e-92 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.003G119100 [exp] 272 / 2e-89 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.008G069300 [exp] 246 / 2e-79 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 240 / 5e-77 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 239 / 1e-76 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 237 / 9e-76 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10025619 pacid=23145110 polypeptide=Lus10025619 locus=Lus10025619.g ID=Lus10025619.BGIv1.0 annot-version=v1.0 ATGGAGGTGGAGAAGTTCCAAGACCTAGCCTACAATGGCGGGACTGCGAAGCAGCTTCCGCCTCAGTTCATCCGTCCAAGCCACGAACGCCCCGAAAACA CTAAGGCCATCGAAGGGGTCACCGTCCCTGTCGTGTCGTTGGCGCAGCCTCACGATGTCCTGGTTGATCAGGTGTCGAAAGCGTGTGAGGAATGGGGGTT TGTGGCGGTAACTGATCACGAAATATCATCAAGATTGATAGAACGACTGCAAGAGGTCGGGGTGGAGTTCTTTGCCTTGCCTTTGAAGGAAAAAGAAGCC TATGCGAACGATGCAGCTAGCGGGAAGTTCGAAGGGTATGGGACTAAGATGCTTAAGCAACCCGACGAGAAAATCGAGTGGCTTGACTATTTCTTCCACC TCACGGCACCTCGTTCTAAGATTAACCGCCAATTTTGGCCCAAACATCCTCCATCTTATAGTGAAGTAACAGAAGAGTACAGCAACGAAATCCTGAAGCT AACAGACAAGATACTCGAGCTACTATCTGAAGGCCTCGGATTAAATCCCGAAGCTCTGAAATCGAGCTTAGGAGGAGACGAAATCGAAGCCGAGATGAAG ATCAACTACTACCCACCTTGCCCTCAGCCAGAGCTGGCTCTTGGAGTTGAGCCTCACACAGATATGTCTGCACTCACCCTTTTGGTCCCCAATGGCGTCG CTGGCCTTCAAGTGTGGAAAAATGGCAACTGGGTTGCCGTTGATTACCTCCCTGGCTCGATCCTTGTCCATGTCGGAGACCAAATCGAGGTCCTGAGCAA CGGCAAGTACAAAGGAGTGCTTCACCGGACAACGGTGAACAAAGAGAAAACACGGATGTCGTGGGCCATGTTCATGGTACCTCCGCACGACAAAGTGATC GGTCCTCTTCCGGAGCTCATGGATGCCGAAAAGAACCCTCCAAAGTACCCGACCAAGACCTTTGCAGAGTACCGATACCGCAAGATCAATAAGCTCCCAC AGTGA
AA sequence Show only first row Show all	>Lus10025619 pacid=23145110 polypeptide=Lus10025619 locus=Lus10025619.g ID=Lus10025619.BGIv1.0 annot-version=v1.0 MEVEKFQDLAYNGGTAKQLPPQFIRPSHERPENTKAIEGVTVPVVSLAQPHDVLVDQVSKACEEWGFVAVTDHEISSRLIERLQEVGVEFFALPLKEKEA YANDAASGKFEGYGTKMLKQPDEKIEWLDYFFHLTAPRSKINRQFWPKHPPSYSEVTEEYSNEILKLTDKILELLSEGLGLNPEALKSSLGGDEIEAEMK INYYPPCPQPELALGVEPHTDMSALTLLVPNGVAGLQVWKNGNWVAVDYLPGSILVHVGDQIEVLSNGKYKGVLHRTTVNKEKTRMSWAMFMVPPHDKVI GPLPELMDAEKNPPKYPTKTFAEYRYRKINKLPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025619 [exp]	0	1
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10019100 [exp]	1.0	1.0000
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10007025 [exp]	1.7	0.9939
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005010 [exp]	2.0	0.9864
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10040632 [exp]	2.0	1.0000
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10007618 [exp]	2.2	0.9703
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016188 [exp]	2.4	0.9367
AT1G27060			Regulator of chromosome conden...		Lus10012474 [exp]	3.2	0.8316
					Lus10000749 [exp]	3.7	0.9273
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10024251 [exp]	3.9	0.8130
AT2G39040			Peroxidase superfamily protein...		Lus10041250 [exp]	4.9	0.9248

Compare expression of checked genes

Lus10025619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.