Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08640 410 / 2e-144 ATFLS1, FLS flavonol synthase 1 (.1.2) AT5G63590 298 / 1e-100 ATFLS3, FLS3, FLS flavonol synthase 3 (.1) AT5G63600 262 / 4e-86 ATFLS5, FLS5 flavonol synthase 5 (.1.2) AT5G43935 259 / 2e-85 ATFLS6, FLS6 flavonol synthase 6 (.1) AT4G22880 249 / 2e-80 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT5G63595 227 / 6e-73 ATFLS4, FLS4 flavonol synthase 4 (.1) AT2G38240 225 / 3e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 218 / 2e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 216 / 2e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G63580 196 / 3e-61 ATFLS2, FLS2 flavonol synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028068 [exp] 646 / 0 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10025619 [exp] 303 / 6e-102 AT5G08640 349 / 5e-120 flavonol synthase 1 (.1.2) Lus10006709 [exp] 243 / 4e-77 AT4G22880 573 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10014134 [exp] 236 / 6e-75 AT4G22880 559 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10005037 [exp] 214 / 9e-67 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 206 / 1e-63 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008824 [exp] 199 / 3e-61 AT1G49390 410 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037292 [exp] 199 / 7e-61 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10006518 [exp] 198 / 2e-60 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086700 [exp] 506 / 0 AT5G08640 432 / 9e-153 flavonol synthase 1 (.1.2) Potri.019G014454 [exp] 424 / 2e-149 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.004G139700 [exp] 405 / 3e-142 AT5G08640 446 / 3e-158 flavonol synthase 1 (.1.2) Potri.004G139600 [exp] 395 / 2e-138 AT5G08640 470 / 7e-168 flavonol synthase 1 (.1.2) Potri.003G119100 [exp] 254 / 1e-82 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.001G113100 [exp] 253 / 6e-82 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.006G101200 [exp] 223 / 3e-70 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 221 / 7e-70 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 221 / 9e-70 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 216 / 7e-68 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10025620 pacid=23144968 polypeptide=Lus10025620 locus=Lus10025620.g ID=Lus10025620.BGIv1.0 annot-version=v1.0 ATGGGAATTGTAAGGGTTCAGGACATAGCCTTGGAATCGAAGGAGAAGATCCCGGAGGAGTTTGTGAGGCACGAGGCCGAGCAGCCAGCAATCACGACCG TTCGTGGGGTCACCCTGGAGGTCCCCACGATCGACCTGAGCGACCCTGACCAGGAAAAGGTTCAGAGGCTGGTGGTGGAAGCCAGCAGAGAATGGGGGAT GTTCCAGATCGTGAACCACGACATCCCTACGGAGCTCACTACCAGGCTCCAGGATGTCGGGAGGCGGTTCTTCGAGCTGCCATTGGAGGAGAAGGAGCTT TATGCAAAGTCGCCCGGTTCGATAGAAGGGTATGGGACCCTTCTTCAGAAGGAAGTTGAAGGCAAGAAAGGATGGGTTGATCATTTGTTTCACAAAGTTT GGCCTCCTTCTGCCGTTGATTACAAGTTTTGGCCAAGAAATCCAGCTTCCTACAGGGAGGTGAATGAGGAGTATACAAAGCACCTGCATGGAGTGGTGAA CAAGCTATACGATAGCCTCTCCTTAGGGCTAGGTTTGGAAGCTGGTGAAGTTAGAGAAGCACTTGGTGGAGATGATTTGGTCTACCTAATGAAGATCAAC TACTACCCGCCGTGTCCACGACCCGATCTAGCCCTTGGTGTCGTGGCCCACACCGACATGTCCTCGCTCACCCTTCTCGTCCCCAACGATGTTCAGGGAC TCCAGGCTTCGAAGGATGGACAGTGGTACAATGTTAGGTACATCCCCAACGCCCTTGTCGTCCACGTTGGTGACCAGATGGAGATAGTGAGCAATGGGTT CTACAAGAGCGTATTGCACAGGACCACGGTGAGCAAGGACCAGACAAGGATGTCTTGGCCGGTGTTCTTCGAGCCACCAACGGACCACGTGGTGGGCCCT CACCGGAAGCTGGTGAGCGAGAACAATCTGGCCAAGTATAAGACCAAGAAGTTTGGAGAGTACTGTTACTGCAAGCTCAACAAGATTCCTCAGTAG
AA sequence Show only first row Show all	>Lus10025620 pacid=23144968 polypeptide=Lus10025620 locus=Lus10025620.g ID=Lus10025620.BGIv1.0 annot-version=v1.0 MGIVRVQDIALESKEKIPEEFVRHEAEQPAITTVRGVTLEVPTIDLSDPDQEKVQRLVVEASREWGMFQIVNHDIPTELTTRLQDVGRRFFELPLEEKEL YAKSPGSIEGYGTLLQKEVEGKKGWVDHLFHKVWPPSAVDYKFWPRNPASYREVNEEYTKHLHGVVNKLYDSLSLGLGLEAGEVREALGGDDLVYLMKIN YYPPCPRPDLALGVVAHTDMSSLTLLVPNDVQGLQASKDGQWYNVRYIPNALVVHVGDQMEIVSNGFYKSVLHRTTVSKDQTRMSWPVFFEPPTDHVVGP HRKLVSENNLAKYKTKKFGEYCYCKLNKIPQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025620 [exp]	0	1
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10001207 [exp]	1.0	0.9491
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	8.5	0.9252
AT2G39300			unknown protein		Lus10019883 [exp]	8.5	0.8582
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	8.6	0.9311
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	10.7	0.9290
AT3G18060			transducin family protein / WD...		Lus10032444 [exp]	11.4	0.9116
					Lus10014719 [exp]	14.8	0.9203
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	17.0	0.9202
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	17.9	0.8768
					Lus10015828 [exp]	20.7	0.9191

Compare expression of checked genes

Lus10025620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.