Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41705 132 / 3e-37 camphor resistance CrcB family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028071 [exp] 185 / 3e-58 AT2G41705 298 / 1e-97 camphor resistance CrcB family protein (.1.2) Lus10025622 [exp] 171 / 4e-52 AT2G41705 432 / 6e-149 camphor resistance CrcB family protein (.1.2) Lus10028072 [exp] 169 / 4e-51 AT2G41705 420 / 5e-144 camphor resistance CrcB family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G174600 [exp] 151 / 2e-44 AT2G41705 414 / 9e-142 camphor resistance CrcB family protein (.1.2) Potri.002G086800 [exp] 149 / 9e-44 AT2G41705 416 / 1e-142 camphor resistance CrcB family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02537 [flax] [poplar] CRCB CrcB-like protein, Camphor Resistance (CrcB)
Representative CDS sequence Show only first row Show all	>Lus10025621 pacid=23145079 polypeptide=Lus10025621 locus=Lus10025621.g ID=Lus10025621.BGIv1.0 annot-version=v1.0 ATGGCTGAACCAGGAGAAGGGTCCCTTGGCATTGACTTGGAGAGTGATGTTGCGCCTCGTTCGACCGAGCCAATGATTGGCTCCAAGGAGTTCTTAGCAC TCAGCCTCAACGGGCGTGGATTGGGGAGATCTAGCGTCCTGAGATGGATACCGTTTGGTATACTAATTGCGAACATCCCCGCATCATGTATCTTGGCCGC ACTAGCAACCGTCAAGAACAAGGTGGATACTAAGAACTGTGACATAATCACAACCGCTATACAGTTTGGCTTCCTGGGTTGTTTGAGTACTGTGTCGATG TTCGTGGCAGAGTGGTATGCCACGGAAGTAGAGAGTACCAAAAGGTGGAGAGCCTACGCATACGTTTTCGGAACGATTCTAGCCTCGTTTACCCTAGGAA TCCTGATATACGCTGTCCCGGTCTGGTCCAAATGA
AA sequence Show only first row Show all	>Lus10025621 pacid=23145079 polypeptide=Lus10025621 locus=Lus10025621.g ID=Lus10025621.BGIv1.0 annot-version=v1.0 MAEPGEGSLGIDLESDVAPRSTEPMIGSKEFLALSLNGRGLGRSSVLRWIPFGILIANIPASCILAALATVKNKVDTKNCDIITTAIQFGFLGCLSTVSM FVAEWYATEVESTKRWRAYAYVFGTILASFTLGILIYAVPVWSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41705			camphor resistance CrcB family...		Lus10025621 [exp]	0	1
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024685 [exp]	10.3	0.8961
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10016334 [exp]	15.9	0.8784
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	16.2	0.8303
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10003642 [exp]	20.1	0.8549
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016211 [exp]	20.7	0.8348
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	23.6	0.8748
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	29.3	0.8579
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	41.9	0.8583
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	45.6	0.8576
AT4G13230			Late embryogenesis abundant pr...		Lus10038156 [exp]	48.2	0.7823

Compare expression of checked genes

Lus10025621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.