Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64310 545 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 292 / 7e-89 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 286 / 5e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 289 / 9e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 285 / 2e-86 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71490 278 / 4e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 278 / 7e-85 MEF22 mitochondrial editing factor 22 (.1) AT3G15130 274 / 2e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 274 / 4e-83 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22150 273 / 3e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028074 [exp] 1069 / 0 AT1G64310 545 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 299 / 6e-93 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033858 [exp] 296 / 6e-93 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 298 / 3e-91 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 298 / 3e-91 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10018492 [exp] 290 / 2e-90 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028855 [exp] 294 / 3e-87 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 288 / 3e-87 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039703 [exp] 281 / 5e-87 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G082366 [exp] 754 / 0 AT1G64310 604 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 310 / 9e-96 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 300 / 1e-92 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.006G105700 [exp] 293 / 1e-90 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G243800 [exp] 286 / 2e-89 AT5G59600 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 289 / 4e-88 AT3G22690 582 / 0.0 unknown protein Potri.013G145000 [exp] 281 / 4e-87 AT1G03540 721 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G128900 [exp] 282 / 1e-86 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G090600 [exp] 286 / 2e-86 AT2G40720 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 283 / 2e-85 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025624 pacid=23144935 polypeptide=Lus10025624 locus=Lus10025624.g ID=Lus10025624.BGIv1.0 annot-version=v1.0 ATGATAATCCGATTCAACCGACTTCTTTCGGAGCTCTCGCAGACCCACCTATCCGCAGCTAGAACCAAGCAGCTACACGCTTTCATCACCAGAACCCACC TAATCCTCGACCCCTTTTTCGCCACCAAGCTTTCGAGGCTCTACTCAAGAAATGGCGACCTCCAGTCTGCACGCCACCTGTTCGACAAAAGTCCGCAACG AAGCATCTACCTCTGGAACTCCATAATCCGAGCTTACGCCCAAGCTCGTTTGTTTGATGATGCATTGTCCCTGTACAGAAGTATGCTCCGAACGGAGACG CAACCTGATAATTTTACTCACGCCTGCGTTCTACGGGCTTGTCATGAAAGCTTTGACGCGGATGGACTGAGGATTGTTCACGGTGAAGTGATTGTTTCTG GGTTTGGATTGGATTCGGTTACCTGTAGCGCATTGGTGACGGGTTATTCGAAAATCGGACTTGTTGGTGAGGCGAGTAAAGTGTTTTATAGGATGGTTGA TCCGGATTTGGTTCTGTGGAATGCTATGATTTATGGGTACTGTTGCGAGGGGTTTTGGGATAAAGGATTGCAGTTGTTTAATGAGATGAGGAGAAATGGA GAGCAGGGACCAGATGGTTACACTTTCGTGGGGCTAATCTCGGGGTTTCTGGATTCGAGTTTGTTAGGCGTTGGGCAAGGAATCCATGGTTTGTGCTTGA AGAGTGGGTTTGAAAGTCTTGGTCATGTAAGCAGTTCCCTTGTGACTCTGTACTCTAGGTTTAAGTTCATGAATTCGGCGTATAGTGTGTTTAGTAACTT GCATCAGCCCGATTTCGTAACATGGTCCTCTTTGATAACCGGCTATCTCCAATCCGGAGAGTATGAAAAAGCTGTGATTCATTGTAGGAAGCTGTATGGA GAAGGCAATAAGCTGGATCACGTCTTAATAGCTAGCTTACTGGTAGCTGCTGCACGCTCAGCAGATATTGGACTTGGTACACAAATTCATGGTTATGCTG TTCGACACGGGCTTGAATCGGATGTCATGGTCTCCTCTTCTCTAATAGATGTGTATTCGAAATGTGGGTTTCTCGGACTAGGGATTCAACTCTTTCGAAG TATAACTAACGTGAATATTACTTCTTATAACACTGCAATCTCAAGCCTTGGCTTGAATGGACTTGCCTCACAGGCTTTTCAACTGTTTGAAGAGGCATTG AAGAATGGCTTAGAACCTGATGAGTCTACATTCTCTGCTCTACTTTGCACTTGTTGTCACGCTGGTCATGTTAATCACGGCCGGGAAATTTTCAGGAGGA TGCAATATGAATTCTGCATCCAAGCAAGAACTGAGCACTGTGTTCACTATGTAAAGCTTCTAGGAATGACAGGGTACTTGGACGAGGCATACAATTTTAT CTTGTCACTGGGGCAGCCTGTTGATTCAGGTATTTGGGGAGCGCTCTTATCATGCTGTGATGCTTATGGAGATTCAGAGTTGGCAGAGGTTATAGCCCAG CATCTCTTCAGTAAGGAGCCTAGAAATGGTGCTTACCGAGTCATGCTATCCAACATGTATGCTAGTGATGGAAAATGGGAAGATGTTAGGCAGATGAGAA ATGGTATGGCAGTTGTTGGAGTGAGTAAAACCCCTGCCCTTAGTATGATTGCAGTTGAAGGGAGTGGCAATTAG
AA sequence Show only first row Show all	>Lus10025624 pacid=23144935 polypeptide=Lus10025624 locus=Lus10025624.g ID=Lus10025624.BGIv1.0 annot-version=v1.0 MIIRFNRLLSELSQTHLSAARTKQLHAFITRTHLILDPFFATKLSRLYSRNGDLQSARHLFDKSPQRSIYLWNSIIRAYAQARLFDDALSLYRSMLRTET QPDNFTHACVLRACHESFDADGLRIVHGEVIVSGFGLDSVTCSALVTGYSKIGLVGEASKVFYRMVDPDLVLWNAMIYGYCCEGFWDKGLQLFNEMRRNG EQGPDGYTFVGLISGFLDSSLLGVGQGIHGLCLKSGFESLGHVSSSLVTLYSRFKFMNSAYSVFSNLHQPDFVTWSSLITGYLQSGEYEKAVIHCRKLYG EGNKLDHVLIASLLVAAARSADIGLGTQIHGYAVRHGLESDVMVSSSLIDVYSKCGFLGLGIQLFRSITNVNITSYNTAISSLGLNGLASQAFQLFEEAL KNGLEPDESTFSALLCTCCHAGHVNHGREIFRRMQYEFCIQARTEHCVHYVKLLGMTGYLDEAYNFILSLGQPVDSGIWGALLSCCDAYGDSELAEVIAQ HLFSKEPRNGAYRVMLSNMYASDGKWEDVRQMRNGMAVVGVSKTPALSMIAVEGSGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10025624 [exp]	0	1
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10013264 [exp]	5.8	0.8233
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10039974 [exp]	7.5	0.7594
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10037390 [exp]	9.4	0.7944
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10000051 [exp]	11.5	0.8076
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	19.2	0.7806
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10012209 [exp]	20.6	0.7261
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10037708 [exp]	24.2	0.7899
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10008825 [exp]	28.7	0.6978
					Lus10034709 [exp]	33.5	0.7790
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10015308 [exp]	34.4	0.7772

Compare expression of checked genes

Lus10025624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.