Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43470 90 / 5e-20 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G48620 90 / 6e-20 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 87 / 4e-19 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 84 / 5e-18 NB-ARC domain-containing disease resistance protein (.1) AT1G58807 79 / 3e-16 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G07040 76 / 2e-15 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58400 75 / 5e-15 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58602 64 / 4e-11 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G59620 62 / 9e-11 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 62 / 9e-11 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028075 [exp] 471 / 1e-164 AT3G07040 168 / 1e-43 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028076 [exp] 333 / 4e-111 AT1G58848 147 / 6e-37 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10027281 [exp] 86 / 2e-18 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 83 / 1e-17 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 79 / 4e-16 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 75 / 5e-15 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 70 / 4e-13 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 68 / 2e-12 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 63 / 7e-11 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083700 [exp] 280 / 1e-92 AT1G58400 108 / 4e-25 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.010G044601 [exp] 195 / 2e-59 AT1G58400 112 / 2e-26 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.008G187700 [exp] 152 / 2e-42 AT3G07040 0 / 1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 110 / 5e-27 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 110 / 6e-27 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 108 / 1e-26 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 108 / 3e-26 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 107 / 6e-26 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134601 [exp] 106 / 8e-26 AT3G07040 443 / 2e-142 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G098900 [exp] 103 / 1e-24 AT3G07040 290 / 1e-87 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025625 pacid=23145139 polypeptide=Lus10025625 locus=Lus10025625.g ID=Lus10025625.BGIv1.0 annot-version=v1.0 ATGTTCAAGAACATAGGTGTGATAGGGATGAAGCTGCCAGAAGGCATAGCTCGATTCACAGACCTCCTTACCCTCACTGGAATACATGGTGGTGGTGACT TTCCCGGACAATTGAGCGAACTGAGAAAGCTCAGGAGGTTGGGAGTGATGGATGTTACTGAAGATATCGCAGATCAACTATTTGCGTCAATTATGAGGCT GCAAAGTCTTATTAGCTTGTCTCTACAGTCAAAATCTCATGCTGGTAAGGAAACGCTCACACTCCCAGAGTCCTTTTCACCTCCACCACTGCTCCAAAAA CTTCGCTTAGAAGGTCGCCTGGAGAAGCTCCCAAACTGGTTTCACTGCTTGAACAATCTGATAAAGTTAAGATTGGGATTCTCTCATCTAGAAGAGGACC CGAGATTGGTACTCCAGCTCCTACCTAATTTGGAGAATCTCACTCTGTGGCAAGCTTATGATGCAAAACAGTTGGGGAAAGAATTCTGCAAGGTTGGTGG GTTCCCAAAATTGGAGGTTCTCAGCACTGCTTCCCATGCGCTTGAAGAATGGACAGAGGTGGAAGAGGGAGCATTCCCAAGCTTACAATACTTGCATATC CACAACTGTTCGCGACTGAGGATGCTCCAAGAAGGCTTGCAGTTCGTCACCACTCTAAAACAGTTGGATTTGTTGCCGCTGCGTGATGAACTTGTTGAGA AACTGAAACCTGATGGCGGAGAGGAGAATTACAAGATCAAGCACATCCCAAACATAAGGTTCCTTCCAATGTCTGCACTGAATTTCACGCCCCCCAACCA ATATGCAAATGAAGGCACACCAGCATAA
AA sequence Show only first row Show all	>Lus10025625 pacid=23145139 polypeptide=Lus10025625 locus=Lus10025625.g ID=Lus10025625.BGIv1.0 annot-version=v1.0 MFKNIGVIGMKLPEGIARFTDLLTLTGIHGGGDFPGQLSELRKLRRLGVMDVTEDIADQLFASIMRLQSLISLSLQSKSHAGKETLTLPESFSPPPLLQK LRLEGRLEKLPNWFHCLNNLIKLRLGFSHLEEDPRLVLQLLPNLENLTLWQAYDAKQLGKEFCKVGGFPKLEVLSTASHALEEWTEVEEGAFPSLQYLHI HNCSRLRMLQEGLQFVTTLKQLDLLPLRDELVEKLKPDGGEENYKIKHIPNIRFLPMSALNFTPPNQYANEGTPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Lus10025625 [exp]	0	1
AT3G46530		RPP13	RECOGNITION OF PERONOSPORA PAR...		Lus10025626 [exp]	1.0	0.9086
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	5.3	0.8143
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10003894 [exp]	8.8	0.7841
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	9.5	0.8111
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10037213 [exp]	10.8	0.7973
AT1G03080			kinase interacting (KIP1-like)...		Lus10006896 [exp]	19.1	0.7649
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021871 [exp]	22.8	0.6938
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	24.7	0.7801
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10016282 [exp]	26.1	0.7684
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10007503 [exp]	26.5	0.7282

Compare expression of checked genes

Lus10025625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.