Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46530 58 / 7e-09 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G50180 51 / 1e-06 NB-ARC domain-containing disease resistance protein (.1) AT3G46730 49 / 6e-06 NB-ARC domain-containing disease resistance protein (.1) AT3G46710 48 / 1e-05 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028075 [exp] 588 / 0 AT3G07040 168 / 1e-43 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028076 [exp] 505 / 1e-176 AT1G58848 147 / 6e-37 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10038983 [exp] 71 / 1e-12 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 66 / 3e-11 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 60 / 2e-09 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 59 / 5e-09 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 58 / 9e-09 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 57 / 1e-08 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 54 / 1e-07 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083700 [exp] 139 / 5e-37 AT1G58400 108 / 4e-25 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.008G187700 [exp] 76 / 7e-15 AT3G07040 0 / 1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 69 / 3e-12 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 68 / 5e-12 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.002G216800 [exp] 68 / 6e-12 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 68 / 6e-12 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134425 [exp] 67 / 6e-12 AT3G07040 347 / 6e-107 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 63 / 2e-10 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G098900 [exp] 62 / 3e-10 AT3G07040 290 / 1e-87 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 61 / 7e-10 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025626 pacid=23144946 polypeptide=Lus10025626 locus=Lus10025626.g ID=Lus10025626.BGIv1.0 annot-version=v1.0 ATGACAGAAGCACAGGTTAAGTTATTCTCACAGAGATTGGGATCATTACTAGTTCAGGAAGCTGACCTTTTTCGAGGTGGACTCCAAGATCAAATCGGGA GGATCCGAAGCACACTCCAGGAGATCGGTCGATTCCTGGGAGATAAGGGTAGTAGTTCCGAGATCGGTGGCTGGTCGAGCCAAGCTCAAGACTTGTGCTT CGAAATGGATGCTCTTATCGACGAATTCATCATTCAGATGCATCAGCAAGATGATCACGAACTTCTGACCGACTCTTTCAAGTGTGAGCTACAGAAGACA GAGTCTCGCTTGGATGAGATGGTCAACAGAAAGCATGAGCCAAGTCAACCATCACGAAATGAGACACAAGCTGCGAAAGAACCATACCAGGGAACCGTCG AGGATGAAACTTTGGATGAATCCAGAAAGCATGAGCGAAATCATCCACCTGAAAATGAGACGAAGAGGCATGAAGCTGGAAAAGAAGCATACCAGGAAAC AGTCGAGGCCCAAATTCACGAGGAAGATCAGACCTCTACTGCAACTTCGGATGAATCCAGGTTGATGTACACTAGCTTGCTTTATTACCTGCAATCTTGC TTGTTGTATTGCTGCATATTTCCCGAGGGTTACTGGGTTTCCAAGGGGAAGTTGATCCGGTTACTAGTAGCTGAAGGTCTGGTTCAGAAAGGGGCTGGAA GATTGCCAGAGGAATTAGCTGAAGAGAACATCGTTGAACTGATCACTCGAGAGATGATCTGCAAGAATAATGAACACCCTGGTCACAGAACAAACATTGC AGTTGCATCTTCGTATAGAGCAATCGTTCGTGAGCGATTTGTATATACCCATCCTGCTCCATATTCAACCATCCCCACTAGAGCACGTAGTGTTTTTACT CCTGACATGACAAATATCACAGAGACGCTGAAAGATACTAGGCCGCTGACATTGTTCTCGTTTGGGAAACAGGATCACTTGGAAGGGAACTGGTTGAGCT TTCCAGGAGCAAAGTTTCTTCGGGTGCTAGATCTTGAAGGAGCTACGATCAAGAGCATACCTGACGAATTGGGAGACCTGCTTCACTTGACATATCTTGG CTTGAAACACAATGATGTCACTGATCTTCCGGCGGCAATCGGCAACTTAAATGCTTTAGAGACGCTGGACATCAGATGGTGTGGGAGATTGACATCACTG TAG
AA sequence Show only first row Show all	>Lus10025626 pacid=23144946 polypeptide=Lus10025626 locus=Lus10025626.g ID=Lus10025626.BGIv1.0 annot-version=v1.0 MTEAQVKLFSQRLGSLLVQEADLFRGGLQDQIGRIRSTLQEIGRFLGDKGSSSEIGGWSSQAQDLCFEMDALIDEFIIQMHQQDDHELLTDSFKCELQKT ESRLDEMVNRKHEPSQPSRNETQAAKEPYQGTVEDETLDESRKHERNHPPENETKRHEAGKEAYQETVEAQIHEEDQTSTATSDESRLMYTSLLYYLQSC LLYCCIFPEGYWVSKGKLIRLLVAEGLVQKGAGRLPEELAEENIVELITREMICKNNEHPGHRTNIAVASSYRAIVRERFVYTHPAPYSTIPTRARSVFT PDMTNITETLKDTRPLTLFSFGKQDHLEGNWLSFPGAKFLRVLDLEGATIKSIPDELGDLLHLTYLGLKHNDVTDLPAAIGNLNALETLDIRWCGRLTSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46530		RPP13	RECOGNITION OF PERONOSPORA PAR...		Lus10025626 [exp]	0	1
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Lus10025625 [exp]	1.0	0.9086
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10016282 [exp]	3.7	0.8345
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10003894 [exp]	6.9	0.7988
AT5G57580			Calmodulin-binding protein (.1...		Lus10018437 [exp]	11.2	0.8022
					Lus10033298 [exp]	15.1	0.8232
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	19.5	0.8036
AT5G66900			Disease resistance protein (CC...		Lus10033299 [exp]	21.2	0.7965
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	23.0	0.7892
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	26.1	0.7652
AT2G31420	B3		Domain of unknown function (DU...		Lus10039058 [exp]	28.5	0.7878

Compare expression of checked genes

Lus10025626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.