Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77700 362 / 2e-124 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 242 / 1e-78 ATLP-3 thaumatin-like protein 3 (.1) AT1G75050 234 / 2e-75 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 221 / 1e-70 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G19320 221 / 1e-70 Pathogenesis-related thaumatin superfamily protein (.1) AT1G73620 221 / 4e-70 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 216 / 1e-68 PR-5, PR5 pathogenesis-related gene 5 (.1) AT2G17860 212 / 6e-67 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 212 / 3e-66 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38660 212 / 1e-65 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028079 [exp] 249 / 3e-82 AT1G77700 176 / 1e-54 Pathogenesis-related thaumatin superfamily protein (.1) Lus10032726 [exp] 229 / 1e-73 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10009058 [exp] 223 / 4e-71 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028447 [exp] 224 / 1e-70 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 223 / 5e-70 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 221 / 1e-69 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 221 / 2e-69 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10028448 [exp] 216 / 5e-68 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 211 / 5e-66 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G087100 [exp] 374 / 6e-130 AT1G77700 384 / 2e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G173900 [exp] 360 / 2e-124 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.003G020100 [exp] 286 / 2e-95 AT1G77700 274 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G210400 [exp] 278 / 3e-92 AT1G77700 273 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112600 [exp] 229 / 2e-72 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 224 / 2e-70 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 224 / 2e-70 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.012G004800 [exp] 221 / 1e-69 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.015G000800 [exp] 218 / 2e-68 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G241000 [exp] 218 / 2e-68 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family CL0072 [flax] [poplar] Ubiquitin PF03671 [flax] [poplar] Ufm1 Ubiquitin fold modifier 1 protein
Representative CDS sequence Show only first row Show all	>Lus10025629 pacid=23145045 polypeptide=Lus10025629 locus=Lus10025629.g ID=Lus10025629.BGIv1.0 annot-version=v1.0 ATGGCAATTCATTCCAACTACGTCCTTTCTCCGGCCGGCGGCGGACGTCTGTTTCCGTTATTCCTTCTTATTGTCCTCTTGTCACCAGGAGCCAAAGAAA CCGTGGAGTCGGCCAGGATATTCACGATAATAAACGACTGCCAAGAAACAATATGGCCGGCCGTAACCCCAGGCGACAACTTCAACGGCGGCGGCTTCCC CTTAAAGCCCCATCAATCCATTGTCTTCACTGCCCCCGTCGGCTGGTCGGGCCGGATTTGGGGTCGAACCGGTTGCAACTTCGACAAGGACGGCAATGGC ACGTGCCAGACCGGAGGCTGCGGTTCCTCCCTCAAATGCAAGGCCTCAGGTAAACCCCCGGCTTCCCTAGCCGAATTCTCCCTCGCTTCAATCGACTACT ACGACGTGAGCCTGGTCGATGGGTTCAATCTCCCGATGGTCGTGACCCCAATCAACGGGCGCGGAAACTGCAGCGTGACCGGCTGCGACGGAGACCTGAG GCCGTCGTGCCCGTCGGAGCTGTCAGTGAAAGGAGGAGGCGGGAAGGTGGTGGGATGTAGGAGCGCGTGCGACGTGTTCGACACCGACGAGTACTGCTGC CGTGGGGTATACGGAAACCCCGTGGTTTGCCAGCCGACGTATTACTCGAAGAAGTTTAAAGATGCTTGCCCTACTGCTTATAGTTATGCCTACGATGATC CCACTAGCATTTTCACTTGCTCCGGCACCGATTATGTCGTTACCTTTTGTTCTTCCAGTGAACGAGATTTCCGCTCGCCACATCAGCATCTGATCGGAGT GTCAAAATCGAATTTCGATCGGACTCTCAGGAAGCGTGAAGAAATGGCGAGCGGCGGCGGCGGAAAAGTCTCCTTCAAAGTCATTCTCAACTCCGATCCT AAGCTTCCTTTCAAAGTGTTTAGCGTGCCGGAGGCTGCCCCGTTCACTGCCGTTATGAGATTCGTAGCTGAGGAATTCAAAGTGCCTCATCAGACAAGCG CGATCATCACCAACGATGGAGTGGGCATCAATCCTCAACAAAGTGCAGGCAATGTCTTCCTCATGCATGGGTCTGTACTGCGCCTGATACCCCGCGATAG AGTCGGAGCCTCCACCGAGAATTGA
AA sequence Show only first row Show all	>Lus10025629 pacid=23145045 polypeptide=Lus10025629 locus=Lus10025629.g ID=Lus10025629.BGIv1.0 annot-version=v1.0 MAIHSNYVLSPAGGGRLFPLFLLIVLLSPGAKETVESARIFTIINDCQETIWPAVTPGDNFNGGGFPLKPHQSIVFTAPVGWSGRIWGRTGCNFDKDGNG TCQTGGCGSSLKCKASGKPPASLAEFSLASIDYYDVSLVDGFNLPMVVTPINGRGNCSVTGCDGDLRPSCPSELSVKGGGGKVVGCRSACDVFDTDEYCC RGVYGNPVVCQPTYYSKKFKDACPTAYSYAYDDPTSIFTCSGTDYVVTFCSSSERDFRSPHQHLIGVSKSNFDRTLRKREEMASGGGGKVSFKVILNSDP KLPFKVFSVPEAAPFTAVMRFVAEEFKVPHQTSAIITNDGVGINPQQSAGNVFLMHGSVLRLIPRDRVGASTEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77700			Pathogenesis-related thaumatin...		Lus10025629 [exp]	0	1
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10021123 [exp]	9.9	0.8621
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10041824 [exp]	10.0	0.8232
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	12.0	0.8626
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10002861 [exp]	27.9	0.7854
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	39.4	0.8289
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10028333 [exp]	42.2	0.8160
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027987 [exp]	42.3	0.8079
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10036727 [exp]	54.4	0.7821
AT5G25280			serine-rich protein-related (....		Lus10039998 [exp]	58.5	0.7558
AT2G35658			unknown protein		Lus10011000 [exp]	93.8	0.7893

Compare expression of checked genes

Lus10025629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.