Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G38131 62 / 8e-12 O-fucosyltransferase family protein (.1) AT1G35510 49 / 2e-07 O-fucosyltransferase family protein (.1) AT2G01480 44 / 2e-05 O-fucosyltransferase family protein (.1) AT1G14970 39 / 0.0007 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003715 [exp] 43 / 4e-05 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 42 / 6e-05 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 40 / 0.0002 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 40 / 0.0003 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G173500 [exp] 61 / 2e-11 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 60 / 6e-11 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 45 / 7e-06 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 44 / 1e-05 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 44 / 2e-05 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025630 pacid=23145098 polypeptide=Lus10025630 locus=Lus10025630.g ID=Lus10025630.BGIv1.0 annot-version=v1.0 ATGGCGATCAACACCGCCGCCCAGGCCAAATCGCACAATGTCGGCAGCGGCGGCGACAACAGCAACTCCTCCTCCACCAGTCCTCCTCCTTCTCCTTCCC CTCCCCCGCCTCCTCCTCCTCTCCGCCACATCGGCCGCCGCCGCACTCGCTCGTCCAAGTTCCGCAAGGAGAACAGTAGCACCACCGCCTTCCTCCGCTG GAACTTCCGCTACCTCCTCTTCCTCCCGCTCCTCTACATTTCCGGCCTGATCATGTGCGTCGGCCCCTTCTCCTCCGCTCTCATCGCTCTCGGCCGCGTC TCCGTCCCCGGTGCCGCCTACCGCAGCCACGAGCTGTTCCACCGTCTCTGGCCTGATATCATTGCCGACAATTTCACCGCAATTCAGGTCTCGCTACACT GTTTGGCTGTTGAGGGAAAAAGTGAGAGTCCAGATTTTAGCTGTGAGCCGCTAGTGTAG
AA sequence Show only first row Show all	>Lus10025630 pacid=23145098 polypeptide=Lus10025630 locus=Lus10025630.g ID=Lus10025630.BGIv1.0 annot-version=v1.0 MAINTAAQAKSHNVGSGGDNSNSSSTSPPPSPSPPPPPPPLRHIGRRRTRSSKFRKENSSTTAFLRWNFRYLLFLPLLYISGLIMCVGPFSSALIALGRV SVPGAAYRSHELFHRLWPDIIADNFTAIQVSLHCLAVEGKSESPDFSCEPLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G38131			O-fucosyltransferase family pr...		Lus10025630 [exp]	0	1
AT1G38065			O-fucosyltransferase family pr...		Lus10025631 [exp]	1.4	0.9039
AT3G13980			unknown protein		Lus10008457 [exp]	3.9	0.7873
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	8.7	0.8262
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10008651 [exp]	21.4	0.7320
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	24.3	0.8171
AT2G02910			Protein of unknown function (D...		Lus10036741 [exp]	25.7	0.7907
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10022150 [exp]	25.7	0.7648
AT5G48500			unknown protein		Lus10020403 [exp]	31.0	0.7404
AT1G29370			Kinase-related protein of unkn...		Lus10007338 [exp]	34.1	0.7670
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	34.8	0.7408

Compare expression of checked genes

Lus10025630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.