Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G38065 603 / 0 O-fucosyltransferase family protein (.1) AT1G38131 600 / 0 O-fucosyltransferase family protein (.1) AT1G35510 484 / 1e-167 O-fucosyltransferase family protein (.1) AT1G14970 446 / 2e-152 O-fucosyltransferase family protein (.1) AT2G01480 441 / 2e-150 O-fucosyltransferase family protein (.1) AT5G65470 288 / 9e-92 O-fucosyltransferase family protein (.1) AT3G26370 282 / 7e-89 O-fucosyltransferase family protein (.1) AT4G24530 281 / 7e-89 O-fucosyltransferase family protein (.1) AT1G29200 279 / 2e-88 O-fucosyltransferase family protein (.1.2.3) AT4G38390 280 / 5e-88 RHS17 root hair specific 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028080 [exp] 857 / 0 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 470 / 3e-161 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 451 / 2e-154 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 447 / 2e-153 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 442 / 8e-151 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 430 / 2e-146 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1) Lus10001545 [exp] 418 / 2e-141 AT1G35510 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 288 / 2e-91 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 287 / 3e-91 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G087300 [exp] 618 / 0 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 605 / 0 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 487 / 2e-168 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 468 / 3e-161 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 459 / 9e-158 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 297 / 3e-95 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 296 / 1e-94 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 282 / 4e-89 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 281 / 1e-88 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 277 / 4e-87 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10025631 pacid=23144991 polypeptide=Lus10025631 locus=Lus10025631.g ID=Lus10025631.BGIv1.0 annot-version=v1.0 ATGGCGTATTGGATCGCTCTGTATATTGCTGAGAACAAATTTTTAGCTGCAGTTGTCTTCTGTGTGGAAGTACAAGAGGAGGTTCAAGGTGCAGAAACCT TGTTCGAATTCGAGTTTCTCGGCGATGAACCGCCGTTTTCCTTCGTTTTCAGCTGGATTGCAGAGTCCTCAGGCCCAAGCGGCTACTTGCTTATTAAGGC CAATGGTGGCCTCAATCAGCAGCGCTCTGCGATATGCAATGCAGTTGCTGTAGCTGGACTTCTAAATGCAGTACTAGTCATTCCAAAATTCGATTTCAAC CGTGTTTGGAAAGATTCAAGCGAGTTTGAGGACATATATGATCAGAATCACTTCATAGCCACACTTGAGAAGCACGTGAAAGTGGTTACAGAATTACCGG ATGAAGTGATGAGAAAATATGACTACAACATGACCAATATTCAATCGATTCGAGTCCCTCCTTGGGCTACTGCAAATTATTACTTGGGACAAATCTATCC CGTCTTAAGAGAGCATGGGGTTCTCCGTTTTTCACCGTTCGCCAATAGGTTGGCAATGAGTGTCCCACCGAATATTCAGTTGCTAAGATGCTTAACAAAT TACAAAGCCTTGAGGTATGCTCCGCCTGTATCGTCATTAGCACAGAAGCTAGTAAACCGAATGATTGAGAAGAGCTCAATAAATGGAGGAAAATATGTTT CCATCCACCTTCGATTTGAGCAGGACATGGTGGCATTTTCATGCTGCATTTATGATGGTGGAGCTACTGAAAGGAATGAAATGGCATCATATCGCGAGTC AGAGTGGAAGGAGAAGTTTAAAAGAACAGATCGTGATGTTAATCCGGGTCTAAACCGAATTGAAGGAAAATGCCCTCTGACCCCACTAGAGGTTGGAATG ATTCTGTGTGGTATGGGATTTGATAACACCACCTCAATATACATAGCATCCGGCAAGATTTACCAAGCAGAAAGACACTTAAAACCGTTGTTGAAGATGT TTCCCCTTCTCTATTTCAAGGAGTCTCTTGCAACACCAGAGGAACTTGCACCATTTGAGGGCCATTCTTCAAGGTTAGCAGCTCTGGACTACACTGTGTC CTTGTATAGCGAGGTTTTCATGACAACACAAGGTGGAAACTTCCCTCATTTCTTAATGGGACATAGAAGATTTCTCAATGGACATGCCAAGACGATCAAG CCCGATAAGCGCAAGCTCGTGGTTTTACTACAAGACAAGACAATCAGTTGGAAGGCCTTCAAGGATCAGATGCAAGAAGTGCTGGCTGAAAGCGACCGCA AAGGACTGATGGTTCCCAGAGTGAAAAAAATCAACAGAAAAACCTCCATCTACCAATACCCATTGCCGGAATGTAGTTGCCTCCAGCCGCCCCAGAACTC GTCCCTCAGATTAAACCACCATGACGATAACTACCATTTAGACTCACTTTGA
AA sequence Show only first row Show all	>Lus10025631 pacid=23144991 polypeptide=Lus10025631 locus=Lus10025631.g ID=Lus10025631.BGIv1.0 annot-version=v1.0 MAYWIALYIAENKFLAAVVFCVEVQEEVQGAETLFEFEFLGDEPPFSFVFSWIAESSGPSGYLLIKANGGLNQQRSAICNAVAVAGLLNAVLVIPKFDFN RVWKDSSEFEDIYDQNHFIATLEKHVKVVTELPDEVMRKYDYNMTNIQSIRVPPWATANYYLGQIYPVLREHGVLRFSPFANRLAMSVPPNIQLLRCLTN YKALRYAPPVSSLAQKLVNRMIEKSSINGGKYVSIHLRFEQDMVAFSCCIYDGGATERNEMASYRESEWKEKFKRTDRDVNPGLNRIEGKCPLTPLEVGM ILCGMGFDNTTSIYIASGKIYQAERHLKPLLKMFPLLYFKESLATPEELAPFEGHSSRLAALDYTVSLYSEVFMTTQGGNFPHFLMGHRRFLNGHAKTIK PDKRKLVVLLQDKTISWKAFKDQMQEVLAESDRKGLMVPRVKKINRKTSIYQYPLPECSCLQPPQNSSLRLNHHDDNYHLDSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G38065			O-fucosyltransferase family pr...		Lus10025631 [exp]	0	1
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	1.0	0.9321
AT1G38131			O-fucosyltransferase family pr...		Lus10025630 [exp]	1.4	0.9039
AT2G02910			Protein of unknown function (D...		Lus10036741 [exp]	5.7	0.8669
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	5.7	0.8943
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10038017 [exp]	7.5	0.8489
AT5G48500			unknown protein		Lus10020403 [exp]	8.3	0.8110
AT1G11390			Protein kinase superfamily pro...		Lus10018416 [exp]	8.8	0.8626
AT3G13980			unknown protein		Lus10008457 [exp]	10.3	0.7943
AT1G23880			NHL domain-containing protein ...		Lus10039421 [exp]	10.8	0.8390
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10022150 [exp]	11.5	0.8124

Compare expression of checked genes

Lus10025631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.