Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75710 230 / 1e-70 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G54630 177 / 3e-50 C2H2ZnF zinc finger protein-related (.1) AT4G27240 173 / 3e-49 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT2G29660 128 / 4e-33 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G11490 100 / 7e-23 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G62520 97 / 1e-22 unknown protein AT4G22560 89 / 7e-20 unknown protein AT4G12450 88 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028083 [exp] 508 / 3e-179 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10024333 [exp] 241 / 3e-77 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 235 / 6e-73 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10033148 [exp] 235 / 9e-73 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10043080 [exp] 174 / 2e-49 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10018388 [exp] 137 / 3e-36 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10018219 [exp] 135 / 2e-35 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1) Lus10040685 [exp] 134 / 8e-35 AT2G29660 322 / 9e-108 zinc finger (C2H2 type) family protein (.1) Lus10007625 [exp] 127 / 1e-31 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G173400 [exp] 316 / 4e-104 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 299 / 8e-98 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.002G023200 [exp] 244 / 8e-77 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.005G238300 [exp] 238 / 2e-74 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.011G131300 [exp] 171 / 3e-48 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.001G415600 [exp] 165 / 4e-46 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.001G249900 [exp] 150 / 4e-41 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.009G043900 [exp] 150 / 5e-41 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.004G030800 [exp] 140 / 2e-37 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.001G121600 [exp] 98 / 8e-23 AT4G22560 258 / 5e-86 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025632 pacid=23145105 polypeptide=Lus10025632 locus=Lus10025632.g ID=Lus10025632.BGIv1.0 annot-version=v1.0 ATGGCTATCTGGAAAACCCCAAAAAAACCCACCACAGAAACCCACCACAAGAATAACAAGAACAAGAGACAGAGCAGCCAAAAACCAGAGAATAAGCCAC CTTCTTCTTCTTCTTCTACATGGAAAGGAATCTTCAGCTGCAAAGATCTCCAAACCCATAACCAGATTCTTAACCAGCTTGACGAACCGGTCACACCCAC CAGCAAGAAGAGCAAGAAACTCAAGTGCTCTGGCTCCCTCTGTAGCAACACTAAGGTAATGCAGTACCGTCCATCAGCAGAATTAATTGGTACTAGTACC AATACTACAAGTGGTACTAGTACAATTATGCAAACCGGTTCGAGTAGTAGATCGATCAGGCCACCGGTTTCGAGCGAAGTGATGGTGAGCAATGGAGGGA GAAGGGGGGTTGTTTCGGGTTCGAGTTATTCGACGTTCAAGGGGATGCCTTTCAGTAGATTTTCAGGGTGCTACGAGTGTAGGATGGTGGTTGATCCAGT TCTTGGAGGGTTTGGTGGTAAAGATTTGAGGAATAGTATCTGTGCTTGTCCAGAATGTGGGCAGATCTTCATGAAAGCTGAGAGCTTGGAGCTTCATCAG GCTGTTAAACATGCTGTTTCAGAGCTAGGAGCAGAGGACACAAGCAAGAACATAGTGGAGATCATATTCCAATCAAGCTGGCTGAAAATGGAATCACCAA TCTGCAAGATCGACAGGATCCTCAAAGTCCACAACACTCAGACCACCATCACAAAATTCGAGGAATACCGAGACTCCATCAAGTCCAAAGCCACTAACTT ATTCCCCAAGAAACACCCCCGGTGCATTGCTGACGGCAATGAGCTCCTCCGCTTCCACTCCACCACCTTCGCCTGCTCCCTCGGCCTCAACGGATCCTCC AACCTCTGTTCCGGACGATGCAACGTTTGCAACATCATTAAGAATGGGTTCACGATCGGTACTGGAGGTGGTGTTGGGATTCTGACGACCGCAACCAGTG GGAAGGCGCACGACAAGGCGGTGGGGCCGACGGTGGTAAGCGTCGAAAAGGCAGAGAAGAGGGCAATGCTAGTGTGTAGAGTGATAGCGGGGAGAGTGAT GAAGAAAAACGGACTCACAATGGGTGTTATTGGGAATTCTCAGGTCTCGCGAGACGGTGAAGAGGAAGAAGGTGGGAAAGAGGGGGAGAGAAAGGAGTAT GATTCAGTGGCTGGTGGGGATGTTGGGGTTTATTCTAATTTGGACGAGCTTTATGTGTTTAACCCTACGGCTATTTTGCCTTGTTTTGTTGTCATTTACT GTGGGTTTTAG
AA sequence Show only first row Show all	>Lus10025632 pacid=23145105 polypeptide=Lus10025632 locus=Lus10025632.g ID=Lus10025632.BGIv1.0 annot-version=v1.0 MAIWKTPKKPTTETHHKNNKNKRQSSQKPENKPPSSSSSTWKGIFSCKDLQTHNQILNQLDEPVTPTSKKSKKLKCSGSLCSNTKVMQYRPSAELIGTST NTTSGTSTIMQTGSSSRSIRPPVSSEVMVSNGGRRGVVSGSSYSTFKGMPFSRFSGCYECRMVVDPVLGGFGGKDLRNSICACPECGQIFMKAESLELHQ AVKHAVSELGAEDTSKNIVEIIFQSSWLKMESPICKIDRILKVHNTQTTITKFEEYRDSIKSKATNLFPKKHPRCIADGNELLRFHSTTFACSLGLNGSS NLCSGRCNVCNIIKNGFTIGTGGGVGILTTATSGKAHDKAVGPTVVSVEKAEKRAMLVCRVIAGRVMKKNGLTMGVIGNSQVSRDGEEEEGGKEGERKEY DSVAGGDVGVYSNLDELYVFNPTAILPCFVVIYCGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10025632 [exp]	0	1
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10005325 [exp]	1.4	0.8128
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025108 [exp]	6.5	0.7894
AT1G21740			Protein of unknown function (D...		Lus10029683 [exp]	7.3	0.7579
AT5G48480			Lactoylglutathione lyase / gly...		Lus10020400 [exp]	8.2	0.7509
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10014905 [exp]	29.5	0.7261
					Lus10006631 [exp]	29.8	0.6878
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	31.0	0.7271
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	36.3	0.7016
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001090 [exp]	58.2	0.6977
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10009342 [exp]	62.7	0.6932

Compare expression of checked genes

Lus10025632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.