Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24080 222 / 5e-64 KRR1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028084 [exp] 732 / 0 AT3G24080 347 / 2e-111 KRR1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125200 [exp] 375 / 4e-122 AT3G24080 248 / 1e-73 KRR1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05178 [flax] [poplar] Kri1 KRI1-like family
Representative CDS sequence Show only first row Show all	>Lus10025633 pacid=23145067 polypeptide=Lus10025633 locus=Lus10025633.g ID=Lus10025633.BGIv1.0 annot-version=v1.0 ATGAAGCTATTCGATGACGGCGACGACGGGACAGAGGACATTTCCAACATCGAGGTCAACCAGGAGTTCGCTCGCCGGTACGAGCACAACAAAAAGCGCG AGGCTCTCCAGCGATACGAAGAGCTGAAAAAGAAAGGCCGAATCGACGGCGAGGACGATACAGAATCGGACGACGAATTGTCGGACGACGACGATCCGGA CAACACCGTAGTAGCCAACAAGGAGGACATTAAATTCTTTGACAAGCTGCTCAAGGTAAAGAACTGCGACCCTTGTTTGAATCAGAATGTTCCCTTATTT AGCGATAGCGAAGAAGAAGAAGATGATGATGATGAAGGAGTGAAACATAAAGAGAAGGAGAAGAAGAAGAAGACAATGTACTTGAAAGATGTTGTTGCTA AAAATTTGATTGAGGAAGGTCCTGAGTTTGATGATGCGGAGACGATCCAGGGAAAGAGAGGGAAGACTTACAATGAAGAACAGGAGGACTTGAGGAAGCA GTTTCTTGATGCTGTGAAGGATGCTGATGATGATGAGGAAGGTGAATTGTTGAAAGTGAAAGATGGAAGCAATGGGAGTAAAGTGGATGATGATGATAAA GAGTTGGAATCCAAATTGGGGGAATACTTTGGTAAGGAGAAAGAATTGGATGAGGGGAAGATGTTCTTGATGGAGTTTTTCAAGAACAAGATGTGGAAGG ATAATAAGAAGAAGCGTCTGGAGATGGAGGAGGAGTTATCGGAGGATGAGGAGGCGATCGATAGGCAAGATGAGTATGAGGCGAAGTATAACTTCAGGCA CGAAGAGAATGCAGGGGACAGGGTGATGGGACACTCCAGGGTGGTAGAAGGTTCAGTGAGGAAGAAGGAGAATTCGAGGAAAGAACAGAGGAAGAAGAAG GAAGAGAGGATGAGGATAGCCGAGATGGAGAGGAAAGAGGAGCTGAAGCACTTGAAGAATCTGAAGAAGAAAGAAATGGAGGAGAAGATTCAAAAGGTGA TGAAGGTTGCAGGCATCGAGAGCAACGATTATTTACTAGATTTGGATGAACTGGAGGATGATTTCGATCCCCAGGAGTACGATAAGATGATGAAGAAAGC GTTTGATGATAAGTACTATCAAGCTGAGGATGCTGATCCCAAGTTTGGCAGCGATGATGATGATGATGAGGATGGGGATATCCAGAAGCCGGATTTTGAC AAGGAGGATGAGTTGCTTGGACTTTCTAAAGGGTGGGACAATGTCGATAATGTGGATGACTTTTTATCAGCAAGGGAAAGGATTTTGAAACAGAAAGGGC AAGAGGGTGATGAAACAGAAGAAGGGAAAAGGAAGAGAAAACGAAAGCTTTCATTAGTCGAAGAAACTAAGAAAGAGTTATTGGATGAGTACTACAAGCT GGATTACGAGGGAACAATCGGAGACCTAAAGACGAGATTCAAGTATGCTAAAGTGGATCGTAACAAATTCGGATTGAAGACTGCGGATATACTGGTATTA GATGATAAAGACTTGAATCAGTATGTTTCAGTGAAGAAGCTTGCTCCTTACAGGGAAGCCGAATGGAAGGTTCCAGGGAATTTACAGAAACAGTACAAGT TGAAGGCTAAAGAGCTTAAGAGAAGCGTTGAGAGCAGGAGGGATGCTAAGAAGCAGCAGAAGTCAAAGAGCAAGGATAGTAAGGATATCTACGAAGAAGG AGAATCAAGTTCAAGTGGGCTATCTAGGAAGGCAAGGAGAAAGCTAAAGCAAGCGCCTTTGAAACTTTCGCAGAGTCGGCTTTCGGCATATGGGAAGACT ACTCAGGATGGAGGCAAGAAGAAGAGAAAGCTATGA
AA sequence Show only first row Show all	>Lus10025633 pacid=23145067 polypeptide=Lus10025633 locus=Lus10025633.g ID=Lus10025633.BGIv1.0 annot-version=v1.0 MKLFDDGDDGTEDISNIEVNQEFARRYEHNKKREALQRYEELKKKGRIDGEDDTESDDELSDDDDPDNTVVANKEDIKFFDKLLKVKNCDPCLNQNVPLF SDSEEEEDDDDEGVKHKEKEKKKKTMYLKDVVAKNLIEEGPEFDDAETIQGKRGKTYNEEQEDLRKQFLDAVKDADDDEEGELLKVKDGSNGSKVDDDDK ELESKLGEYFGKEKELDEGKMFLMEFFKNKMWKDNKKKRLEMEEELSEDEEAIDRQDEYEAKYNFRHEENAGDRVMGHSRVVEGSVRKKENSRKEQRKKK EERMRIAEMERKEELKHLKNLKKKEMEEKIQKVMKVAGIESNDYLLDLDELEDDFDPQEYDKMMKKAFDDKYYQAEDADPKFGSDDDDDEDGDIQKPDFD KEDELLGLSKGWDNVDNVDDFLSARERILKQKGQEGDETEEGKRKRKRKLSLVEETKKELLDEYYKLDYEGTIGDLKTRFKYAKVDRNKFGLKTADILVL DDKDLNQYVSVKKLAPYREAEWKVPGNLQKQYKLKAKELKRSVESRRDAKKQQKSKSKDSKDIYEEGESSSSGLSRKARRKLKQAPLKLSQSRLSAYGKT TQDGGKKKRKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	0	1
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	1.0	0.8751
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10005380 [exp]	3.0	0.8515
AT5G40570			Surfeit locus protein 2 (SURF2...		Lus10003658 [exp]	4.2	0.8207
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	4.7	0.8616
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	6.5	0.8203
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10018859 [exp]	7.5	0.8337
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	11.6	0.8334
					Lus10037794 [exp]	13.3	0.7085
AT4G08580			microfibrillar-associated prot...		Lus10020321 [exp]	13.3	0.8011
AT1G16350			Aldolase-type TIM barrel famil...		Lus10000276 [exp]	14.2	0.7473

Compare expression of checked genes

Lus10025633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.