Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08180 1091 / 0 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT2G31020 1016 / 0 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT1G13170 845 / 0 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT4G22540 761 / 0 ORP2A OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) AT4G12460 761 / 0 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT2G31030 699 / 0 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT1G77730 221 / 3e-66 Pleckstrin homology (PH) domain superfamily protein (.1) AT3G09300 186 / 4e-51 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G59420 176 / 1e-47 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1) AT5G02100 175 / 2e-47 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028087 [exp] 1525 / 0 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025695 [exp] 850 / 0 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10036949 [exp] 850 / 0 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10006237 [exp] 831 / 0 AT1G13170 1219 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10024613 [exp] 771 / 0 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10035967 [exp] 763 / 0 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10032251 [exp] 684 / 0 AT4G22540 979 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10024386 [exp] 179 / 1e-48 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 176 / 1e-47 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088000 [exp] 1189 / 0 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.005G172900 [exp] 1170 / 0 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.019G015111 [exp] 896 / 0 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.010G051400 [exp] 841 / 0 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.003G111600 [exp] 815 / 0 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.001G121700 [exp] 810 / 0 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.008G182766 [exp] 293 / 2e-92 AT1G13170 471 / 2e-161 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.006G086400 [exp] 175 / 2e-47 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.018G143600 [exp] 62 / 6e-10 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.006G076400 [exp] 58 / 2e-08 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [flax] [poplar] Oxysterol_BP Oxysterol-binding protein CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10025635 pacid=23145008 polypeptide=Lus10025635 locus=Lus10025635.g ID=Lus10025635.BGIv1.0 annot-version=v1.0 ATGCATCATTTCTGCTGCACATCAACAGTGTCGAACAACTCCCCGACTGCTGCTACTGCGAATCCCCTGATGGCTATCGCCGCCAGATCCGACCTTTCTT CCCGATCGTTCACCGACCGCATTCACTTCTCCGATCGTCGCCATCATGGCCGCACCGCGTCCGTCGATTCTGTTATCAGTAACGGCGGTGGAGGAGGAGG AAGGCACAGTTGTCGGATTTCTACTGTGGCGAATTCGGCCTCCGGGAGGGAGCAGCCGGTGGATGTGAAGATTAATGATATAGTAGGGAACGGGATATCG GGGATCCTGCATAAGTGGGTGAACTATGGCAAAGGTTGGAGGCCGAGGTGGTTCGTATTGCAGGATGGAGTTGTGTCGTATTACAAGATTCATGGACCTG ATAGGATCGTTGTTAATCTGGAGACTGAGAAAGGATGTAAAGTGATTGGGGAAGAGTCGATAAGAAGGATTTCCAGGGCGGATAATGGAACTACTTTGCA GCAGAGAAGGATTCCTGTTGGCGAAGTTCATCTCAAGGTGTCTTCGATTCGAGAAAGTAGATCAGATGATAAGAGATTCTCAATATTTACGGGGACTAAA AGGCTCCATTTGCGAGCTGAGACAAGGGAGGATCGATTGGCATGGATGGAGGCATTGCAGGCGGTGAAGGACTTATTCCCTAGGATTTCCAACAGCGAGT TAATGGCTCCGGTGGACAACGTGGCTGTCTCGACTGAAAAACTGAGGCAGATGCTTGAAGAAGAAGGGGTTAGGGAAGAAGTGATTCTGGAAAGCGAGCA GATCATGAGGACTGAGTTCACAGGCTTGCAGAACCAAATAGAGCTGTTGAAGCAGAAGCATCGACAGCTGATTGAAACGCTGCGGCAGTTAGAGACGGAA AAAGTCGATCTGGAGAATACAGTTGTTGATGAGAGCCAAAGACAGTGGAATGACCAAGGGACGTCTTCTATGGCAGCTCGTGACAAGTTTAGTGATGCAA GCGGATTTGAATCTGAGGATGACAATGAAAGAGTAGATGCTGCAGAAGAGGAAACAGACGACGAGGAGAATAATTTCTTCGACACTCGCGATTTTCTCTC ATCGGGTTCTTTTAAAAGTAATGGATCTGATTTCCGGACATCTTCGTTCTCTTCAGATGACGAAGGGCTACATCCTCACGAACTTGAAGATGATATTGAT CCTTCAATTAGGTCCGCTGGGCTTGATTATCCATATGTTAAGAGACGTAAAAAGTTACCAGATCCAATCGAAAAGGAGAAAGGCATCAGTCTTTGGTCGA TGATTAAGGATAATATTGGGAAGGACCTTACAAAAGTTTGTCTTCCTGTTTATTTCAACGAACCTATTTCTTCTCTTCAAAAGTGCTTTGAAGATTTGGA GTACTCCTATCTCATTGATAGAGCATGTGAATGGGGAAGAAAGGGTGACAGTCTGATGAGGATTCTTAACGTTGCTGCCTTTGCTGTTTCTGGATATGCT TCAACGGAAGGAAGAATCTGCAAACCATTTAATCCACTACTAGGTGAAACATACGAGGCTGATTACCCAGATAAGGGAATCCAATTTTTCTCTGAGAAGG TTAGTCACCATCCCATGATTGTGGCATGTCACTGTCAGGGCACAGGATGGAAGTTTTGGGGAGATAGCAATTTAAAAAGCAAGTTTTGGGGTCGTTCTAT ACAGCTTGATCCGGAGGGTCTTTTGACTTTGGAGTTCGACGATGGCGAAGTCTTTCGATGGTCTAAAGTGACTACATCAATATACAACCTGATACTAGGG AAGCTATACTGTGACCATTACGGCACAATGCGCATAGAAGGAAACCGTGATTTCTCTTGTAAGCTGAAATTTAAGGAGCAATCCATCATCGACCGAAATC CTCACCAGGTGCAAGGAGTCATTCAGGATAAGAGCGGGAAAACCGTCGCGACTCTGTTCGGAAAATGGGATGAGAGCATGCATTATGTTCTTGGCGGGAA GGCTAAAGGGTTCGAGTCATCAGAAGCTCGTATGCTCTGGAGAAGAAGCAACCCGCCAAAATCCCCTACGAAATATAACTTGACCCACTTCGCCATAACA TTGAATGAGCTTACCCCTGGTCTCAAGGAGAGGTTACCACCTACGGATTCAAGGCTCAGACCTGACCAGAGGTACTTGGAAAATGGCGAGTTCGAGATGG CGAACTCTGAGAAGTTGAGGCTGGAACAGCGCCAACGTCAGGCACGGAAGATGCAGGAGAGTGGGTGGAAACCACAGTGGTTTGCCAAGGATAACGGAAG CCCTTCGTACCGTTACACAGGTGGGTACTGGGAAGCCAGAGAGAAAGGAAACTGGGAATCCTGTCCTGATATATTCGGTCAAGTCCCGGCTGATCAAGTC CTCAGCTAA
AA sequence Show only first row Show all	>Lus10025635 pacid=23145008 polypeptide=Lus10025635 locus=Lus10025635.g ID=Lus10025635.BGIv1.0 annot-version=v1.0 MHHFCCTSTVSNNSPTAATANPLMAIAARSDLSSRSFTDRIHFSDRRHHGRTASVDSVISNGGGGGGRHSCRISTVANSASGREQPVDVKINDIVGNGIS GILHKWVNYGKGWRPRWFVLQDGVVSYYKIHGPDRIVVNLETEKGCKVIGEESIRRISRADNGTTLQQRRIPVGEVHLKVSSIRESRSDDKRFSIFTGTK RLHLRAETREDRLAWMEALQAVKDLFPRISNSELMAPVDNVAVSTEKLRQMLEEEGVREEVILESEQIMRTEFTGLQNQIELLKQKHRQLIETLRQLETE KVDLENTVVDESQRQWNDQGTSSMAARDKFSDASGFESEDDNERVDAAEEETDDEENNFFDTRDFLSSGSFKSNGSDFRTSSFSSDDEGLHPHELEDDID PSIRSAGLDYPYVKRRKKLPDPIEKEKGISLWSMIKDNIGKDLTKVCLPVYFNEPISSLQKCFEDLEYSYLIDRACEWGRKGDSLMRILNVAAFAVSGYA STEGRICKPFNPLLGETYEADYPDKGIQFFSEKVSHHPMIVACHCQGTGWKFWGDSNLKSKFWGRSIQLDPEGLLTLEFDDGEVFRWSKVTTSIYNLILG KLYCDHYGTMRIEGNRDFSCKLKFKEQSIIDRNPHQVQGVIQDKSGKTVATLFGKWDESMHYVLGGKAKGFESSEARMLWRRSNPPKSPTKYNLTHFAIT LNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANSEKLRLEQRQRQARKMQESGWKPQWFAKDNGSPSYRYTGGYWEAREKGNWESCPDIFGQVPADQV LS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	0	1
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	1.0	0.8964
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	5.2	0.8335
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10015510 [exp]	7.3	0.8161
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011008 [exp]	7.3	0.7841
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	9.4	0.8111
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	11.4	0.8037
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10014844 [exp]	13.4	0.7925
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	14.2	0.8119
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10038122 [exp]	14.8	0.8675
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10005205 [exp]	15.7	0.8206

Compare expression of checked genes

Lus10025635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.