Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29290 375 / 2e-125 EMB2076 embryo defective 2076, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 119 / 2e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 110 / 9e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 106 / 2e-24 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G74850 105 / 7e-24 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G65560 101 / 1e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 98 / 1e-21 PGR3 proton gradient regulation 3 (.1) AT2G35130 94 / 3e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G22470 93 / 7e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 93 / 8e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018198 [exp] 805 / 0 AT3G29290 394 / 2e-132 embryo defective 2076, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 114 / 1e-26 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 111 / 8e-26 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018318 [exp] 107 / 2e-24 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10007468 [exp] 99 / 1e-21 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017134 [exp] 98 / 1e-21 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10012068 [exp] 97 / 6e-21 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 96 / 7e-21 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042529 [exp] 96 / 1e-20 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090500 [exp] 422 / 1e-142 AT3G29290 559 / 0.0 embryo defective 2076, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 111 / 7e-26 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 108 / 4e-25 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 105 / 4e-24 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019200 [exp] 102 / 5e-23 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 101 / 9e-23 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G019300 [exp] 100 / 2e-22 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G035700 [exp] 100 / 3e-22 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.004G147700 [exp] 100 / 4e-22 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 98 / 2e-21 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025637 pacid=23144965 polypeptide=Lus10025637 locus=Lus10025637.g ID=Lus10025637.BGIv1.0 annot-version=v1.0 ATGATAATTGGTAACTGCGTCGATAAAGTTTGTTCCTGGGGTTCAAGTGGGAGGATAAAGTGTGGACCTTTATATCAGATTGGTGGAGCTCAATTGAAAT TCACCCCAAAACCCCAATGTGTGAATGGCTGCTCTCAATCCGCCATGGAAGTTGTTCGATTTTCAAGTAAAGGTATGCATTTGCTAGAGGAAACTGATGA ACAGAATCTATCAGAAAGGATTCTTATGCTTAGCAGATCCAATAAGGTCAGGAGTGCAATTTCACTGTTCAGATCAATGAGGTACACAGGACTAATTCCT AATCAACACGCTTGCAATTCACTCTTAGCATCTTTGTTAAGGAAAAAAGATCAAATTGAGGATGCATTGGAAGTGTTTGAGTTCATGAAGTCGAACGAGA TCGCAACTCCTCACACTTACAGCTTGATGCTGAAAGCAGTTGCAGATACTGAAGGTTGCGATTCAGCTTTCGGTGTGTATGGAACAATGGAAGAGAAAGA TTTGGATGTGGTTGTTTACAATACTGTCATATCGATCTGTGGGAGAACGAACAATTGGGATCGAGCCGAGAAGGTATGGAGAACGATGAATCAAAGGGAG TGTCTTGGATCAGAGGTTACTTACTCATTGTTAGTTAGCATTTTCGGTAGGTGTGGCAAGAATGAGCTTGCTTTTAGTGCCTACAACGAAATGCGTCGAA ATGGATTTAGGCCACGGGATGACACGATTGAGGTTGTTATCGTGTTATACGCGAAAGAAGGGAAGTGGGATTCGGCTTTGGAACATTTCCAGGAAATTTT GAATGATGGGATGATGAAAAGTCCAAGTCTTGATACATGCCATTCTCTAATGAAGTCATTAGGATTAGCTGGGAAGGTGAAAAGGGCGTTTTGGGTGTTT GAATGTCTCGAAATGTTGGGTCACGAACCCAACTCGTACACTTTTAATGCGTTGCTCAAGGCTCTATACTGGGGGAACAGACATAGCGACGTTATTCGAC TTTTCGAAGTACTTTTGGAGACAAAGGAGAGGTCTTTGATTGATGAGCTGGCGTATAGAACTGCTCTGATGTCTTGTCGGATGCTTGGTCTGTGGGAGAA GGCTGTTCAGATACTGTGGAAGATGGAAAGCAGTTGTGAAGTGTTGGTTTCAAGTGTGTGTTATAATCTTGTTATTGGTGCTTGTGATAAGGGTGGGAAT GCTGATGTGGCACTGCGAGTTTATGAACGCATGGTGCAGCAAGAGTGCAGTCCGGATCGGTATACTTATCTGTCGTTGGTACGAGTCTGCATTACGGGGT CAATGTGGTCTGAAGTTGAAGGGATTCTAGATGTAAGATTTCTCAACCATTCTATTTGCAGTTTCTGA
AA sequence Show only first row Show all	>Lus10025637 pacid=23144965 polypeptide=Lus10025637 locus=Lus10025637.g ID=Lus10025637.BGIv1.0 annot-version=v1.0 MIIGNCVDKVCSWGSSGRIKCGPLYQIGGAQLKFTPKPQCVNGCSQSAMEVVRFSSKGMHLLEETDEQNLSERILMLSRSNKVRSAISLFRSMRYTGLIP NQHACNSLLASLLRKKDQIEDALEVFEFMKSNEIATPHTYSLMLKAVADTEGCDSAFGVYGTMEEKDLDVVVYNTVISICGRTNNWDRAEKVWRTMNQRE CLGSEVTYSLLVSIFGRCGKNELAFSAYNEMRRNGFRPRDDTIEVVIVLYAKEGKWDSALEHFQEILNDGMMKSPSLDTCHSLMKSLGLAGKVKRAFWVF ECLEMLGHEPNSYTFNALLKALYWGNRHSDVIRLFEVLLETKERSLIDELAYRTALMSCRMLGLWEKAVQILWKMESSCEVLVSSVCYNLVIGACDKGGN ADVALRVYERMVQQECSPDRYTYLSLVRVCITGSMWSEVEGILDVRFLNHSICSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Lus10025637 [exp]	0	1
AT2G28230			TATA-binding related factor (T...		Lus10030830 [exp]	3.7	0.8613
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	10.3	0.8621
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10036865 [exp]	12.7	0.8220
AT3G13000			Protein of unknown function, D...		Lus10033328 [exp]	14.1	0.8266
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	14.1	0.8496
AT3G62000			S-adenosyl-L-methionine-depend...		Lus10036339 [exp]	18.0	0.8503
AT2G17695			unknown protein		Lus10041839 [exp]	19.1	0.8512
					Lus10018814 [exp]	19.7	0.8143
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10027829 [exp]	21.2	0.8455
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	21.5	0.8415

Compare expression of checked genes

Lus10025637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.