Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39360 417 / 1e-149 EDL2 EID1-like 2 (.1) AT5G15440 406 / 2e-144 EDL1 EID1-like 1 (.1) AT3G63060 191 / 2e-60 EDL3 EID1-like 3 (.1) AT4G02440 45 / 3e-05 EID1 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042699 [exp] 465 / 1e-168 AT5G39360 428 / 4e-154 EID1-like 2 (.1) Lus10029662 [exp] 462 / 2e-167 AT5G39360 423 / 4e-152 EID1-like 2 (.1) Lus10018196 [exp] 421 / 4e-151 AT5G39360 364 / 6e-129 EID1-like 2 (.1) Lus10028001 [exp] 201 / 2e-63 AT3G63060 312 / 6e-107 EID1-like 3 (.1) Lus10000659 [exp] 150 / 7e-45 AT3G63060 212 / 1e-68 EID1-like 3 (.1) Lus10007870 [exp] 52 / 9e-08 AT4G02440 399 / 9e-140 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Lus10030373 [exp] 52 / 2e-07 AT4G02440 407 / 8e-143 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125000 [exp] 449 / 2e-162 AT5G39360 418 / 4e-150 EID1-like 2 (.1) Potri.017G090300 [exp] 445 / 9e-161 AT5G39360 415 / 1e-148 EID1-like 2 (.1) Potri.002G205150 [exp] 61 / 1e-10 AT4G02440 371 / 9e-129 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Potri.014G130000 [exp] 58 / 1e-09 AT4G02440 370 / 2e-128 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025639 pacid=23145109 polypeptide=Lus10025639 locus=Lus10025639.g ID=Lus10025639.BGIv1.0 annot-version=v1.0 ATGATTTTAACCAAGCAATACCGGTGCATACACTCATCAAGCTGTCAATGCACAAAGGGACATCTCAGCGAAGATGTGATATTCTTAGTTTTCCAGCAGC TGAACTGGAATCCCAAGTTGATCGCTGCTCTATCATGCACTTGCAAGTGGTTTGACGATCTAGCCAAGAGGGTACTATGGAAGGAATTCTGCAAAACAAG AGCTCCAAAGATGATGATCGATCTACAGTCCAGCGGAAGCCACAGTGTTGATGGAAGTTGGAGGGCACTCGGGAAGATGCTTATCTACTGTTCAGGTTGC ACCAAAGGTGGTCTATTCAAAAGCATTCAAGTACCAGGCCATTTCGTTCACAGGACTCGGTTCTCTAGAACTTCAGGCAAAAGCTTCCTCCTGCCTCAAT GTAGAACCGACGTTTTATACGTCTCGGACCCGTGCGAGCATCTAGACCAAGGGGACGAAGGGGATATAGGATTCTTTCGAGGAATCTTCAAGTCGTTCCC TGTTTCCAAAGTCCGAAAAACGCTGATTCAAAGAGGAGCGCCCTTGCATCCTACGCAGTCGTGTCCATATTGCAAGGCAAAGCTTTGGAACATGCTGCAA GCAAAGATGATACCGACAAGTGCCAGCTGCCGACTAGGTTCGTACGAGGACTGTATCGAGTATTATGTTTGCCTCAACGGTCACGTGCTAGGGATCTGCA CGCTATTACCCTTGTCGGAGTCGGAGGAGGTTTCCGAGATTGAGAGATGA
AA sequence Show only first row Show all	>Lus10025639 pacid=23145109 polypeptide=Lus10025639 locus=Lus10025639.g ID=Lus10025639.BGIv1.0 annot-version=v1.0 MILTKQYRCIHSSSCQCTKGHLSEDVIFLVFQQLNWNPKLIAALSCTCKWFDDLAKRVLWKEFCKTRAPKMMIDLQSSGSHSVDGSWRALGKMLIYCSGC TKGGLFKSIQVPGHFVHRTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGDEGDIGFFRGIFKSFPVSKVRKTLIQRGAPLHPTQSCPYCKAKLWNMLQ AKMIPTSASCRLGSYEDCIEYYVCLNGHVLGICTLLPLSESEEVSEIER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10025639 [exp]	0	1
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	1.7	0.9035
AT5G19430			RING/U-box superfamily protein...		Lus10009695 [exp]	2.0	0.8803
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Lus10035872 [exp]	2.6	0.8746
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	3.5	0.8951
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	5.0	0.8786
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010188 [exp]	5.7	0.8736
AT4G38090			Ribosomal protein S5 domain 2-...		Lus10035937 [exp]	6.0	0.8563
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10025575 [exp]	6.9	0.8581
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Lus10032557 [exp]	9.2	0.8576
AT1G02070			unknown protein		Lus10009267 [exp]	10.5	0.8653

Compare expression of checked genes

Lus10025639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.