Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G37140 131 / 3e-37 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT3G26120 123 / 8e-32 TEL1 terminal EAR1-like 1 (.1) AT5G07930 108 / 4e-28 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT1G67770 110 / 1e-27 TEL2 terminal EAR1-like 2 (.1) AT5G61960 92 / 6e-21 AML1 MEI2-like protein 1 (.1.2) AT1G29400 90 / 3e-20 AML5 MEI2-like protein 5 (.1.2) AT5G07290 90 / 4e-20 AML4 MEI2-like 4 (.1) AT4G18120 89 / 7e-20 AML3 MEI2-like 3 (.1.2) AT2G42890 70 / 2e-13 AML2, MEI2 MEI2-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018195 [exp] 343 / 8e-119 AT1G37140 128 / 2e-35 MEI2 C-terminal RRM only like 1 (.1.2) Lus10018194 [exp] 235 / 9e-76 AT1G37140 143 / 1e-40 MEI2 C-terminal RRM only like 1 (.1.2) Lus10025641 [exp] 226 / 3e-72 AT1G37140 142 / 6e-40 MEI2 C-terminal RRM only like 1 (.1.2) Lus10006234 [exp] 118 / 6e-30 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10036953 [exp] 117 / 2e-29 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10002047 [exp] 93 / 2e-22 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10020769 [exp] 87 / 6e-19 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2) Lus10007346 [exp] 85 / 2e-18 AT1G29400 779 / 0.0 MEI2-like protein 5 (.1.2) Lus10004591 [exp] 84 / 6e-18 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088200 [exp] 142 / 9e-40 AT1G37140 159 / 3e-46 MEI2 C-terminal RRM only like 1 (.1.2) Potri.013G084400 [exp] 135 / 2e-37 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1) Potri.010G051100 [exp] 129 / 1e-33 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.008G183000 [exp] 127 / 3e-33 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.012G107100 [exp] 92 / 1e-20 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.015G106000 [exp] 90 / 5e-20 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.001G067300 [exp] 88 / 2e-19 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.005G202000 [exp] 85 / 2e-18 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.003G162700 [exp] 84 / 3e-18 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.002G059800 [exp] 84 / 4e-18 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF04059 [flax] [poplar] RRM_2 RNA recognition motif 2
Representative CDS sequence Show only first row Show all	>Lus10025640 pacid=23144936 polypeptide=Lus10025640 locus=Lus10025640.g ID=Lus10025640.BGIv1.0 annot-version=v1.0 ATGGCCTCCTCCAAAACCTCCCACCCCCTCAACCCAAACGCCACACCTTACACCACCCTCTCCGCCGCCGCCCCAACCCAACAGCGACCACATGACTCAC CGGCGGCGGCACGCAGCTTGAGCTACAGACCACGGCCTGAGATGGGCTCATCGGGATCCGAGCATGAAAAGAGGATTTTGCTCAAGAAGAGGAAGAAGAA AAACAACAAAACATTCGTCGCTGACCGACGTGGCGACGGAAGTCCGAGATTTTCGGCGTTGACTAAGTTGACTGAAGAAACCGTAAAGAGCGGCGGCGCT GATATGGAGAAGGAGGTGGAAGGAGCGGCTACGAGCTTAATGATTCGGAATATCCCGAATCATTTCCTGAGGAGTCGGATGATGGGCTATCTTGACCGTC ACTGCGCCGCGGAAAACTTATCCGCCGTCACCGGCGGCGGAGTGCTGTCTGAGTATGACTTTTTGTACGTTCCGATGGACTTCAGTACTGGGGGGAATCT GGGATACGCATTCGTGAACTTCACCACCGCCGTCGCCGCGTGCAGATTCCGGCGGTCTTTCAACGACTACGCATGGGGAATTTGCAACCCCGGTAAAATC TGCCAAATCTCCGACGCTACTATTCAGGGGAAGAAGGCCTTGGTTGCTAAGTTCAGGAACTCAACGTTCAGATGCCACCGTGACAATTACCTTCCGCTGG TCTTCGATCCCCCACGGGGCGGAAAGTTTCCGAATTCGCTTGGAACGATGGTCGGCCAGTGTTTACCACGTCCTTTCCCTCGTCGCTGA
AA sequence Show only first row Show all	>Lus10025640 pacid=23144936 polypeptide=Lus10025640 locus=Lus10025640.g ID=Lus10025640.BGIv1.0 annot-version=v1.0 MASSKTSHPLNPNATPYTTLSAAAPTQQRPHDSPAAARSLSYRPRPEMGSSGSEHEKRILLKKRKKKNNKTFVADRRGDGSPRFSALTKLTEETVKSGGA DMEKEVEGAATSLMIRNIPNHFLRSRMMGYLDRHCAAENLSAVTGGGVLSEYDFLYVPMDFSTGGNLGYAFVNFTTAVAACRFRRSFNDYAWGICNPGKI CQISDATIQGKKALVAKFRNSTFRCHRDNYLPLVFDPPRGGKFPNSLGTMVGQCLPRPFPRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10025640 [exp]	0	1
					Lus10010480 [exp]	8.9	0.9441
					Lus10038209 [exp]	9.8	0.9597
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10026697 [exp]	13.4	0.9570
					Lus10001854 [exp]	17.7	0.9548
AT2G21650	MYB	RSM1, ATRL2, ME...	RADIALIS-LIKE SANT/MYB 1, MATE...		Lus10040453 [exp]	20.5	0.9544
					Lus10010663 [exp]	22.9	0.9535
					Lus10014229 [exp]	25.1	0.9535
AT2G39518			Uncharacterised protein family...		Lus10031304 [exp]	27.1	0.9535
AT4G03230			S-locus lectin protein kinase ...		Lus10031602 [exp]	29.0	0.9535
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006721 [exp]	30.7	0.9535

Compare expression of checked genes

Lus10025640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.