Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G37140 141 / 1e-39 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT3G26120 124 / 9e-31 TEL1 terminal EAR1-like 1 (.1) AT1G67770 117 / 1e-28 TEL2 terminal EAR1-like 2 (.1) AT5G07930 102 / 1e-24 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT5G61960 96 / 5e-21 AML1 MEI2-like protein 1 (.1.2) AT1G29400 94 / 1e-20 AML5 MEI2-like protein 5 (.1.2) AT5G07290 91 / 2e-19 AML4 MEI2-like 4 (.1) AT4G18120 89 / 9e-19 AML3 MEI2-like 3 (.1.2) AT2G42890 68 / 4e-12 AML2, MEI2 MEI2-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018194 [exp] 550 / 0 AT1G37140 143 / 1e-40 MEI2 C-terminal RRM only like 1 (.1.2) Lus10018195 [exp] 239 / 4e-76 AT1G37140 128 / 2e-35 MEI2 C-terminal RRM only like 1 (.1.2) Lus10025640 [exp] 227 / 3e-72 AT1G37140 131 / 3e-37 MEI2 C-terminal RRM only like 1 (.1.2) Lus10006234 [exp] 122 / 4e-30 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10036953 [exp] 117 / 2e-28 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10002047 [exp] 93 / 9e-22 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10020769 [exp] 84 / 4e-17 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2) Lus10004591 [exp] 83 / 6e-17 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10011968 [exp] 83 / 7e-17 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088200 [exp] 147 / 2e-40 AT1G37140 159 / 3e-46 MEI2 C-terminal RRM only like 1 (.1.2) Potri.013G084400 [exp] 135 / 9e-36 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1) Potri.010G051100 [exp] 134 / 3e-34 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.008G183000 [exp] 133 / 9e-34 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.015G106000 [exp] 94 / 2e-20 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.012G107100 [exp] 94 / 2e-20 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.001G067300 [exp] 90 / 4e-19 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.003G162700 [exp] 87 / 5e-18 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.005G202000 [exp] 85 / 1e-17 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.002G059800 [exp] 83 / 6e-17 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF04059 [flax] [poplar] RRM_2 RNA recognition motif 2
Representative CDS sequence Show only first row Show all	>Lus10025641 pacid=23145075 polypeptide=Lus10025641 locus=Lus10025641.g ID=Lus10025641.BGIv1.0 annot-version=v1.0 ATGGCTGAAACCTCTCACTCCCTCAACCCCAACGCCGCCCCCTTCGTCACCGGCGGAGGTCCATGTCAGCAACCGGCGAAAATGACCCCCTCACCGCCGC TTCTCCTCCCCCACGAGAGATACTCCCAAACCTCCCCTAAGCTTCTACTGCAGCCGCCACCACCACCCATCTCTTCCTCCAATGTAGCTTCGGTCCTTCA TTTCTCCACCGCCGCTACCGCCTTCTGTCACGACCAACACTACTACTTCTGCTACGGCGACCACTTCTTTTACCACCGCCGCCAAACTCTCTACTACGCC ACCGTCGGAGCCGGAAACTGTCACGGTGGCTTCCACCCCATCCCGCATCATGCACTTCCGCTTTCGCCGGCGGAAACGGCGGCGGCAGATTCATACAGCT TCCAGCTGGTCCCAACTGCCAGCTACGCAGTAAAAAACTTTTCTGCATCGGAGCTGGAGAGGAGGACGGTTGTGAAGAAGAAGAAGATACTTAAGAAGAA GAAGTACGTCCCTCACCGACGTGGCGGCGGAAGTAAGGACACGGGGCAATGCAAAAGGTCGTCGGCGTTGACCAAGGTCTCTCCTTCGTTTACTGAAGAA AAGAAAAACAACGGCGGCGATGGACCCACGAGCCTGATGATTCGGAACATTCCGAACCATCTCCAGAGGGTTCAGATGCTGGGGTATTTGGACAGTCATT GCGCCGCCGAGAATTCCACCGCCGGCGCAGGCGGTGTTCTTTCCGAATATGACTTTTTCTACCTGCCCATTGACTTCATGACTGGGGCGAACTTGGGGTA TGCATTCGTGAGCTTCACCACCGCCGTGGCGGCATCCAGATTCCTGCAGGATTTCGACGGCTACGCCTGGCGAGTTCGCGACTCCGGGAAAATCTGCCAG ATCACCGCCGCTACTATTCAGGGGAAAGAAGCTCTAGTTGCGAACTTCAGCAACTCGAGGTTCGAGTGCCACCGCGACCAGTACCTTCCGGTGGTGTTTG ATCCTCCACGTGGCGGCAGGTTTCCCAAGGCGGTCGGAGAGGTGGTCGGCCAGCGGGTGGCTCCTCTCCGAAGGACCGCCAACTCTGAAGAGTGTGGCAT GAATGCTGGTGTTTGCATTGTCTCCCTCGCTGCTTGGGCTTGGGTGAAATGGAAACACTGGCTAGCTGCTGTTATCACTGTCATTATTTAG
AA sequence Show only first row Show all	>Lus10025641 pacid=23145075 polypeptide=Lus10025641 locus=Lus10025641.g ID=Lus10025641.BGIv1.0 annot-version=v1.0 MAETSHSLNPNAAPFVTGGGPCQQPAKMTPSPPLLLPHERYSQTSPKLLLQPPPPPISSSNVASVLHFSTAATAFCHDQHYYFCYGDHFFYHRRQTLYYA TVGAGNCHGGFHPIPHHALPLSPAETAAADSYSFQLVPTASYAVKNFSASELERRTVVKKKKILKKKKYVPHRRGGGSKDTGQCKRSSALTKVSPSFTEE KKNNGGDGPTSLMIRNIPNHLQRVQMLGYLDSHCAAENSTAGAGGVLSEYDFFYLPIDFMTGANLGYAFVSFTTAVAASRFLQDFDGYAWRVRDSGKICQ ITAATIQGKEALVANFSNSRFECHRDQYLPVVFDPPRGGRFPKAVGEVVGQRVAPLRRTANSEECGMNAGVCIVSLAAWAWVKWKHWLAAVITVII

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10025641 [exp]	0	1
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10042626 [exp]	6.2	0.9661
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	8.2	0.9749
					Lus10021217 [exp]	9.6	0.9762
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	10.8	0.9745
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	11.8	0.9743
					Lus10042586 [exp]	21.2	0.9161
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	21.9	0.9678
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10013205 [exp]	22.8	0.9720
					Lus10026293 [exp]	23.2	0.9674
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10032882 [exp]	23.7	0.9703

Compare expression of checked genes

Lus10025641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.