Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14320 222 / 4e-75 EMB3137 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) AT1G77750 130 / 3e-39 Ribosomal protein S13/S18 family (.1) AT4G09800 44 / 9e-06 RPS18C S18 ribosomal protein (.1) AT1G34030 44 / 9e-06 Ribosomal protein S13/S18 family (.1) AT1G22780 44 / 9e-06 RPS18A, PFL1, PFL 40S RIBOSOMAL PROTEIN S18, POINTED FIRST LEAVES 1, POINTED FIRST LEAVES, Ribosomal protein S13/S18 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018192 [exp] 335 / 1e-119 AT5G14320 222 / 3e-75 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Lus10006182 [exp] 135 / 1e-39 AT5G14320 132 / 1e-38 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Lus10037359 [exp] 125 / 5e-37 AT1G77750 141 / 3e-43 Ribosomal protein S13/S18 family (.1) Lus10035785 [exp] 92 / 2e-24 AT1G77750 102 / 7e-29 Ribosomal protein S13/S18 family (.1) Lus10034179 [exp] 46 / 1e-06 AT1G34030 302 / 3e-107 Ribosomal protein S13/S18 family (.1) Lus10014676 [exp] 45 / 2e-06 AT1G34030 303 / 1e-107 Ribosomal protein S13/S18 family (.1) Lus10022057 [exp] 45 / 2e-06 AT4G09800 303 / 1e-107 S18 ribosomal protein (.1) Lus10042603 [exp] 45 / 3e-06 AT1G22780 304 / 5e-108 40S RIBOSOMAL PROTEIN S18, POINTED FIRST LEAVES 1, POINTED FIRST LEAVES, Ribosomal protein S13/S18 family (.1) Lus10006914 [exp] 45 / 3e-06 AT4G09800 304 / 5e-108 S18 ribosomal protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088300 [exp] 266 / 2e-92 AT5G14320 229 / 5e-78 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Potri.005G172600 [exp] 263 / 3e-91 AT5G14320 227 / 5e-77 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Potri.002G088400 [exp] 129 / 5e-38 AT1G77750 175 / 4e-56 Ribosomal protein S13/S18 family (.1) Potri.005G196600 [exp] 46 / 3e-06 AT4G09800 278 / 2e-96 S18 ribosomal protein (.1) Potri.005G211200 [exp] 45 / 3e-06 AT4G09800 276 / 7e-97 S18 ribosomal protein (.1) Potri.002G051300 [exp] 45 / 3e-06 AT4G09800 275 / 2e-96 S18 ribosomal protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0303 [flax] [poplar] H2TH PF00416 [flax] [poplar] Ribosomal_S13 Ribosomal protein S13/S18
Representative CDS sequence Show only first row Show all	>Lus10025642 pacid=23144974 polypeptide=Lus10025642 locus=Lus10025642.g ID=Lus10025642.BGIv1.0 annot-version=v1.0 ATGATTCAAAGCCTAGCAATGCCGGCAGCTTCTTCGGTTTCCCTCTTCTGCAACGGAATCAATCGGAGCTCACTCTCCAACTTCGTCTCCCTCCCGCGCC AAAAGTCCCCCAAGATTGGTGGGCTGACGATTACCTGCGTACGTGTCGGCGGAGTTGAAATCCCTAACGGCAAGAGAGTGGAGTACTCGCTTCAGTACAT TCATGGAATCGGCCGTTCGATGTCGCGGCAAATCCTAGCGGACTTGAGCTTGGAGAACAAGATCACCAAGGATTTGAGCGAGGAGGAGCTCGCCAATGTT CGTGCTGAAGTCTCCAAGTACATGATTGAAGGAGACTTGAGGCGTTTCAATGCGATTAATATAAGGAGGTTGAAGGAGATCCAATGCTACAGAGGAATTA GGCATATAAGGGGGTTGCCCTGCAGAGGGCAGCGCACCAAGAACAATTGCCGGACTTTGAAAGGTAAGCGAGTCGCCATTGCTGGGAAGAAGAAAGCAGT TAAGTAA
AA sequence Show only first row Show all	>Lus10025642 pacid=23144974 polypeptide=Lus10025642 locus=Lus10025642.g ID=Lus10025642.BGIv1.0 annot-version=v1.0 MIQSLAMPAASSVSLFCNGINRSSLSNFVSLPRQKSPKIGGLTITCVRVGGVEIPNGKRVEYSLQYIHGIGRSMSRQILADLSLENKITKDLSEEELANV RAEVSKYMIEGDLRRFNAINIRRLKEIQCYRGIRHIRGLPCRGQRTKNNCRTLKGKRVAIAGKKKAVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10025642 [exp]	0	1
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	1.0	0.9897
AT2G42220			Rhodanese/Cell cycle control p...		Lus10023820 [exp]	2.0	0.9818
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10037822 [exp]	3.5	0.9786
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10013041 [exp]	4.5	0.9762
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10033200 [exp]	5.3	0.9762
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10025799 [exp]	6.3	0.9698
AT4G02725			unknown protein		Lus10006915 [exp]	6.9	0.9682
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10000520 [exp]	8.7	0.9588
AT2G33450			Ribosomal L28 family (.1)		Lus10023747 [exp]	8.8	0.9691
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	8.8	0.9744

Compare expression of checked genes

Lus10025642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.