Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21880 547 / 0 LYM1 lysm domain GPI-anchored protein 1 precursor (.1.2) AT1G77630 489 / 1e-172 LYM3 lysin-motif \(LysM\) domain protein 3, Peptidoglycan-binding LysM domain-containing protein (.1) AT2G17120 141 / 3e-38 LYM2 lysm domain GPI-anchored protein 2 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018191 [exp] 746 / 0 AT1G21880 550 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10014441 [exp] 146 / 8e-38 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10023945 [exp] 139 / 3e-37 AT2G17120 280 / 4e-92 lysm domain GPI-anchored protein 2 precursor (.1) Lus10026372 [exp] 135 / 1e-35 AT2G17120 249 / 3e-80 lysm domain GPI-anchored protein 2 precursor (.1) Lus10003326 [exp] 122 / 3e-31 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10022630 [exp] 121 / 7e-31 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10014442 [exp] 79 / 2e-16 AT2G17120 223 / 2e-72 lysm domain GPI-anchored protein 2 precursor (.1) Lus10023946 [exp] 71 / 8e-15 AT2G17120 138 / 6e-41 lysm domain GPI-anchored protein 2 precursor (.1) Lus10042285 [exp] 66 / 2e-11 AT1G73470 152 / 8e-42 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G084800 [exp] 613 / 0 AT1G21880 554 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.005G176700 [exp] 594 / 0 AT1G21880 548 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.004G183500 [exp] 151 / 5e-42 AT2G17120 318 / 3e-107 lysm domain GPI-anchored protein 2 precursor (.1) Potri.009G143300 [exp] 132 / 7e-35 AT2G17120 311 / 1e-104 lysm domain GPI-anchored protein 2 precursor (.1) Potri.005G128200 [exp] 60 / 2e-09 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G078700 [exp] 59 / 3e-09 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.009G010300 [exp] 58 / 5e-09 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160501 [exp] 54 / 3e-08 AT2G23770 66 / 3e-12 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G085350 [exp] 54 / 5e-08 AT2G23770 125 / 7e-33 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 53 / 2e-07 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10025643 pacid=23145115 polypeptide=Lus10025643 locus=Lus10025643.g ID=Lus10025643.BGIv1.0 annot-version=v1.0 ATGCAGCAGTTCAAACACATTTCTCTCTTCCTAATCCTCTTCCTCCATTCAGCAGCATCCAAATCCACAATCGAGCCCTGCTCGAACGCCGACACCTGCA GCTCATTACTCGGCTACACGCTCTACACAGACCTCAAAGTATCGGAAGTAGCCTCCCTCTTCCAAATCGACCCAATCTCCCTTCTAACCGCAAACTCAAT CGACATCTCCTACCCGGACGTCGAGAATCGCATCCTCCCTTCGCAGCTCTTTCTCAAGGTCCCCATCCAGTGCTCCTGCGTGGACGGGATTCGGAAATCG GTTTCCACTCGCTACAAGACTCGCCCCTCGGACACTCTGTCGGCGATCGCTGACTCGATCTACGGCGGGTTGGTCTCCGCCGACCAGATTAAGGAGGCGA ATTCGATCGACGATCCGACGGTGCTTGATGTTGGGGAGAGCCTTGTGGTTCCCTTGCCGTGTACTTGCTTTAACGGGACGGATAACTCTCTGCCGGCTAT TTACTTGTCGTATGTTGTGAAAGGTGTGGATTCCTTGGCGGGGATTGCTGCTAGGTATGCGACTACGATTACTGATTTGATGAATGTTAACGCCATGGGT GGTTCTTCCATCAAGGCTGGTGATATTCTCGCTGTACCACTTCCTGCTTGTGCGTCTAGGTTTCCTAGATACGCCTCCGATTTCGGCCTGATGGTTCCGA ACGGGAGCTATGCAATAGTTGCGAGCCATTGCGTGCAGTGCAGTTGTGGACCGGGGAGCCTCAACTTGTACTGTATGCCGGCTTCATTGGCGGTGTCTTG TTCGAGCATGCAATGCCGAAGCAGCAACCTTATGCTTGGGAATGTTACGATGCAGCAGAGTAGCGCGGGGTGTAATGTGACCTCTTGCAGCTACGGTGGA TACGTTAATGGCACCATCATCACCTCGTTGAACACTGCTCTTCAACCACGCTGTCCTGGACCACAACAATTCCCAGCCCTCATAGCTCCTCCGACAACCG TAACAAAGGATTCCGAATTCGCTCCAGCATCAGCTCCCTCGCCTCAAGCATATGGAGGTGGGGCTCTGCCTTCCACAGTACCCGCAACTGGTTCGCTGCC AGGGTTTACAGCAGCAAACGGTCCGATGGGCAGCTCAACTGGATCCGATGCCTGCTCCTTGGTCATCCCATTGGGAAGCTTCGTACCTTCTTTTGCATTG CTCATGTTCGTGAACCTTATGTTGTAG
AA sequence Show only first row Show all	>Lus10025643 pacid=23145115 polypeptide=Lus10025643 locus=Lus10025643.g ID=Lus10025643.BGIv1.0 annot-version=v1.0 MQQFKHISLFLILFLHSAASKSTIEPCSNADTCSSLLGYTLYTDLKVSEVASLFQIDPISLLTANSIDISYPDVENRILPSQLFLKVPIQCSCVDGIRKS VSTRYKTRPSDTLSAIADSIYGGLVSADQIKEANSIDDPTVLDVGESLVVPLPCTCFNGTDNSLPAIYLSYVVKGVDSLAGIAARYATTITDLMNVNAMG GSSIKAGDILAVPLPACASRFPRYASDFGLMVPNGSYAIVASHCVQCSCGPGSLNLYCMPASLAVSCSSMQCRSSNLMLGNVTMQQSSAGCNVTSCSYGG YVNGTIITSLNTALQPRCPGPQQFPALIAPPTTVTKDSEFAPASAPSPQAYGGGALPSTVPATGSLPGFTAANGPMGSSTGSDACSLVIPLGSFVPSFAL LMFVNLML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	0	1
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015778 [exp]	1.7	0.8980
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	2.4	0.9162
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	2.8	0.9155
AT3G15000			cobalt ion binding (.1)		Lus10032619 [exp]	4.9	0.8857
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	5.1	0.8746
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	6.0	0.8836
AT5G43020			Leucine-rich repeat protein ki...		Lus10018733 [exp]	6.5	0.8883
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	8.1	0.8765
AT4G27490			3'-5'-exoribonuclease family p...		Lus10037395 [exp]	8.9	0.8809
AT5G41760			Nucleotide-sugar transporter f...		Lus10036726 [exp]	10.1	0.8168

Compare expression of checked genes

Lus10025643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.