Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15390 152 / 4e-41 SDE5 silencing defective 5 (.1.2) AT5G58720 76 / 1e-14 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018188 [exp] 531 / 0 AT3G15390 241 / 1e-73 silencing defective 5 (.1.2) Lus10040668 [exp] 68 / 4e-12 AT5G58720 416 / 1e-140 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Lus10018236 [exp] 64 / 1e-10 AT5G58720 417 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G051300 [exp] 207 / 1e-61 AT3G15390 271 / 5e-85 silencing defective 5 (.1.2) Potri.004G042100 [exp] 195 / 4e-57 AT3G15390 271 / 2e-85 silencing defective 5 (.1.2) Potri.001G401900 [exp] 166 / 5e-46 AT3G15390 273 / 2e-85 silencing defective 5 (.1.2) Potri.009G046300 [exp] 82 / 1e-16 AT5G58720 418 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08590 [flax] [poplar] DUF1771 Domain of unknown function (DUF1771)
Representative CDS sequence Show only first row Show all	>Lus10025646 pacid=23145123 polypeptide=Lus10025646 locus=Lus10025646.g ID=Lus10025646.BGIv1.0 annot-version=v1.0 ATGGAGGTAGCTGCTTGTAATGTCCCAACATACGATGATGAGGAGAAGGCACTAGCAGTTTTGCTCGATGCATTCGGTTCGCTGTTTTCCCTTGAACAGA TTGCTTCTGCTTACTGCAAGGCTGGTCGAGATCCAAATTTGGCTGGTCAGCTCTTGTATGATTCGAAAGGAAGTTTGTCGAGCTCTTCACACTGTGAACC TAACAAAGAGGAGGTCGATGGAAATGCTTCTGTCTCATCCAGAAGTACTGCTGCAAGGATATCAAGTGACGGTGATCAAAGGATTAAAGCTGCAAAGCAA AAAGGGCGTCCGGTCTCTGCAGGCACGGTTTCAAGTTTTCTTGGTAAATGTGGATACGGCATGCAAGCGGGCATGGAGAAATTAATTAATCTATCAGATA TTGCAGCAGAAAGAAATAACAAGCGTCTTCGTGAAACTACGGAAAAGCTCTCAAAAGCAAGTTTAAAAAATGAAAGCCCTTGGCAAGGTGTAAATCAACA ACAGGATTGTTCAGAAAGTGACTTTGCTTTGCAAAAGAGAAATGATCTCCAAAAGGAAGTCTTAGCTGCTCTTTTCACCGCTCCTGAAAGAGTCGAGGAG CCTCCTAAAAGAATAGTAAGACCTCCAAGGAGGGCTGTTTTTTCACGTGACGCAGTATACGATCCTCCTCGTGAGGTTATGGTTAGTAAACCAATTGAAG CACAAGCAGTGACAGGTGTTGATAATGTTGCAGCTAAATCAGAAGCTGCTGAAGTAGAGGACAAGTATCAGCGCCTTCGCAGGGTAGTGATGGAGAGTCG AGTAACCATGAAAGAATATTACATATCTTCTGTTGAAGCTTTTACAAAGGGAGACTATGAGAAAGCAGACAGATTAATGGAAAAGGGGAATTTTTTCCGC AACAAGGCCCAACAAGCTGACGATGAATCCGAAAGCAAGCTCTTCCAAACCAAATATGCAGAGACAGAAGAACAGATGGCGATCGATTTACATGAGCATG ACACCAAGGATGCAATACGCTTTTTGAAGCTTCATCTCTCGAAACTTTCAGGCATCTCATCTATCAAATACTTGAAGTTAACCGTCGAGACTAATGAGGA GGACACAACGAAAGGGAAGCGTAAAAGAACTATGAAGAAGTTCCTGGATAGAGAGTCGATCAGCTGGACGGAAGAGGAAGCGAGACCTGGGATACTAATG GTTCGAGTGGACAATGTCGACAGGAGTAAATTGAGTTTCCCCGATAAGAACTGA
AA sequence Show only first row Show all	>Lus10025646 pacid=23145123 polypeptide=Lus10025646 locus=Lus10025646.g ID=Lus10025646.BGIv1.0 annot-version=v1.0 MEVAACNVPTYDDEEKALAVLLDAFGSLFSLEQIASAYCKAGRDPNLAGQLLYDSKGSLSSSSHCEPNKEEVDGNASVSSRSTAARISSDGDQRIKAAKQ KGRPVSAGTVSSFLGKCGYGMQAGMEKLINLSDIAAERNNKRLRETTEKLSKASLKNESPWQGVNQQQDCSESDFALQKRNDLQKEVLAALFTAPERVEE PPKRIVRPPRRAVFSRDAVYDPPREVMVSKPIEAQAVTGVDNVAAKSEAAEVEDKYQRLRRVVMESRVTMKEYYISSVEAFTKGDYEKADRLMEKGNFFR NKAQQADDESESKLFQTKYAETEEQMAIDLHEHDTKDAIRFLKLHLSKLSGISSIKYLKLTVETNEEDTTKGKRKRTMKKFLDRESISWTEEEARPGILM VRVDNVDRSKLSFPDKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15390		SDE5	silencing defective 5 (.1.2)		Lus10025646 [exp]	0	1
AT3G15390		SDE5	silencing defective 5 (.1.2)		Lus10018188 [exp]	7.7	0.8071
					Lus10004941 [exp]	8.2	0.7533
AT1G18950			DDT domain superfamily (.1)		Lus10004259 [exp]	14.6	0.8377
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	15.2	0.8000
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019587 [exp]	16.7	0.7697
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	22.6	0.8092
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	26.2	0.7651
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10006627 [exp]	26.2	0.7997
AT5G61390			Polynucleotidyl transferase, r...		Lus10019078 [exp]	28.2	0.7578
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003576 [exp]	31.0	0.7960

Compare expression of checked genes

Lus10025646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.