Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65070 892 / 0 DNA mismatch repair protein MutS, type 2 (.1.2) AT5G54090 279 / 4e-81 DNA mismatch repair protein MutS, type 2 (.1) AT3G24320 92 / 9e-19 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT4G25540 77 / 5e-14 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G02070 75 / 2e-13 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G24495 71 / 4e-12 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT3G18524 68 / 2e-11 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G17380 66 / 8e-11 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 54 / 6e-07 ATMSH5 MUTS-homologue 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018187 [exp] 1761 / 0 AT1G65070 899 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10032917 [exp] 252 / 8e-71 AT5G54090 808 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Lus10015589 [exp] 236 / 3e-65 AT5G54090 791 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Lus10014462 [exp] 87 / 4e-17 AT3G24320 1506 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10023718 [exp] 84 / 5e-16 AT3G24320 1594 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10017724 [exp] 81 / 3e-15 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10027452 [exp] 77 / 2e-14 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10010010 [exp] 76 / 2e-13 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10005743 [exp] 75 / 2e-13 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G041900 [exp] 1152 / 0 AT1G65070 924 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Potri.012G005000 [exp] 259 / 1e-73 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Potri.010G065000 [exp] 91 / 3e-18 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.015G142900 [exp] 75 / 2e-13 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.006G156314 [exp] 71 / 3e-12 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 70 / 8e-12 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.014G121701 [exp] 70 / 9e-12 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.012G060000 [exp] 67 / 4e-11 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.001G156200 [exp] 66 / 7e-11 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.011G089500 [exp] 54 / 6e-07 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01713 [flax] [poplar] Smr Smr domain CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V
Representative CDS sequence Show only first row Show all	>Lus10025647 pacid=23145037 polypeptide=Lus10025647 locus=Lus10025647.g ID=Lus10025647.BGIv1.0 annot-version=v1.0 ATGGAAATCCTCACTCATTTCCTCTCCACCAAAGCTTCCCCGCTCATCTTCCTTCCCCACCATCGCCCTCTCAAAACCTCACCAAAACCTCTACTCCGTT CCTTCTCCTCCTTCACCATCCGCTCACAGCTCATTCTCCCAAACTCTCTCCAATCCGATACCCTGCAAGCTCTGGAATGGGACTCCCTCTGCGCTCACCT CGCTCACTTCACTTCCACTTCCATGGCCCGCTCAGTCGCTCAGCGAGCAACCATCCCCATCGGCTCCTCCCTGGAAGAGAGCCAGAAGCTCCTCGACCAG ACCGCGGCGGCAATCTCCGTCATGAATTCTGGACCGCCGCTGGACTTCTCTCAGTTCCAGGACATAACCGAAATCGTCGATTCCGCCGTCTCCGGGACTC TTCTCACCGTCAGGGAGCTATGCGCCGTTAGACGGACGCTGATTGCAGCGAGAACAGTTGCAGAGCGATTGATTCAGAGCGATGATGGTTTGGATAGGAT TGGCTCTCTGCTTGAAATAATTCACGGTTGCGATTTCCAATCAGAATTGGAGCAGAAAATAGGGTTTTGTATAGACTGCAATCTCCTGGTAATCCTAGAC AGGGCAAGTGAGGAATTGGAGATGATTAGGTCAGAGAGAAAGAAGAATATGGAGAATATGGAAGCATTGCTAAAGGCTGTATCTACCAGAGTTTTCCAGG GTGGTGGCATTGATAGGCCTTTGGTAACCAAGCGTCGTAGTAGGTTCTGTGTTGGAGTTAGAGCTACTCACAGGCGCTTAGTTCCAGGTGGCGTGGCACT AGATGTTAGTAGCTCTGGTGCAACGTACTACATGGAGCCTGGTGAGGCTGTGGAGTTGAATAACTTGGAAGTCACGCTTTCTAACTCTGAGAAGGAAGAG GAAATGGCCATTTTGAGCATGCTTACTGCTGAGATAGCAGAATCAGAAAGGGGAATCAAATATGTGTTAGTTTGTATTTTGGCAATTGATCTTGCTTTTG CTAGAGCTGGGTATTCACAGTGGATGAATGGGGTGTGCCCAATTATTATGTCAGAAACGTGCTCAGCTGGCTATTTAGGTGACACATACGATCAGTTGTT AGTTGATATTGAAGGCATACAGCATCCGTTGCTTCTAGCTAAACGAGAGAATTCATTTGAACAGGATGGTGGAAATGGTGTAGTGGACAAAGGAAGTATT TTGGAACGCCAACCTGATTTTCCTGTGCCGATAAACATCAAAGTGAAATGTGGAACCAGGGTGGTCGTTATGTCTGGCCCTAACACCGGTGGGAAAACCG CTTCAATGAAAACCCTGGGTGTGGCATCTCTCATGTCCAAGGCTGGCTTGTATTTGCCTGCTAAGAATGCCCCAAAGTTGCCCTGGTTTGATCTAGTTCT GGCAGATATAGGGGACCATCAGTCTTTAGAACAAAGCCTTTCTACTTTTAGTGGGCACATATCTCGGATCTGCAACATCTTGGAACTAGCTTCAGAACAA TCCCTTGTGCTCATTGACGAGATCTGCAGTGGAACGGATCCATCTGAAGGAGTGGCTCTCTCAGCAAGCATCTTGAAATATCTAGGAGATAGGGTCAACT TGGCAGTTGTGACAACTCATTACGCCGATCTCAGTCTTCTCAAAGAAAAGGATGCTAGATTTGAGAATGCAGCAATGGAGTTTTGTCTTAAAACCTTGCA ACCGACCTACCAAGTTCTCTGGGGAAGCACTGGTGACTCGAATGCATTAAGCATTGCTAAATCTATTGGTTTTGACATCAATATAATCGAACGTGCACAA AATTGGCTGGATAAGTTAAGGCCTGAAATGCAGCAGGAGCGTAGAGGCTTGCTTTATGAATCGCTAGTGGAAGAAAGAAGCAGATTAAAGGCCGAGGCTG CGAAATCTGCATCTGTGCATGCAGATACTATGGAGATCTACAATGAGCTTAATCTTTTCCTGTCTTCTTACACCATGGACTCTCCAATCAAGCTTCGAGA GGAAGCAGAAGAACTTGACAAGCGTGTGGTAGCTCTCATGGCAAAGGAAACTCAGCAGGCTCGACAGGAAGTGAATGCCGTGAAGTCTGAAATCCAAATT GTGATGCAGGAATTTGACAACCTACTTAGAATAACCATCCCCGAACAGTACAATACACTGATAAGGAAGTCAGAAGATAGAATTGCATCCATTGTAGAAG TTCATAGCCCTGCTTCTGATCTCCCTGGCAGTGGAACAAATAGCAGGTCTTATACCCCTCAGCTTGGAGAAAAAGTCCTGGTGAAGTCATTAGGAGATAA GATAGCTACTGTGGTTGAAGCACCCGGGGATGACGATGTAGTTTTGGTTCAATACGGTAAAATCAAAGTCCGAGTAAAGAAAACCGAGATAAGAGCTACT CGAGGTGCGAAGAAGATCAGCATCGCTTCTAATTCCTCGAGACAGGTGAAGAGGCAGGTTCAGCAGATGGACTCAGAATCACAGACTGAGAAACCAAAGG AGGGTTATAGTGCTCGCGTGCAAACATCGAGAAACACGGTGGATCTACGAGGGATGAGAGTAGAAGCAGCATCATTGCACCTCACTGCAGCCATAGCTGA TAGAGAGGCACAGTCAGTTGTCTTCGTTGTACACGGGACAGGAACCGGAGCTGTTAAGAAGCGGACGCTTGAGATATTAGCAAAGCATCCGCGTGTGACT AAATATGAACCAGAGAGTCCAACAAACTGGGGCTGTACAGTTGCTTATATCAAGTGA
AA sequence Show only first row Show all	>Lus10025647 pacid=23145037 polypeptide=Lus10025647 locus=Lus10025647.g ID=Lus10025647.BGIv1.0 annot-version=v1.0 MEILTHFLSTKASPLIFLPHHRPLKTSPKPLLRSFSSFTIRSQLILPNSLQSDTLQALEWDSLCAHLAHFTSTSMARSVAQRATIPIGSSLEESQKLLDQ TAAAISVMNSGPPLDFSQFQDITEIVDSAVSGTLLTVRELCAVRRTLIAARTVAERLIQSDDGLDRIGSLLEIIHGCDFQSELEQKIGFCIDCNLLVILD RASEELEMIRSERKKNMENMEALLKAVSTRVFQGGGIDRPLVTKRRSRFCVGVRATHRRLVPGGVALDVSSSGATYYMEPGEAVELNNLEVTLSNSEKEE EMAILSMLTAEIAESERGIKYVLVCILAIDLAFARAGYSQWMNGVCPIIMSETCSAGYLGDTYDQLLVDIEGIQHPLLLAKRENSFEQDGGNGVVDKGSI LERQPDFPVPINIKVKCGTRVVVMSGPNTGGKTASMKTLGVASLMSKAGLYLPAKNAPKLPWFDLVLADIGDHQSLEQSLSTFSGHISRICNILELASEQ SLVLIDEICSGTDPSEGVALSASILKYLGDRVNLAVVTTHYADLSLLKEKDARFENAAMEFCLKTLQPTYQVLWGSTGDSNALSIAKSIGFDINIIERAQ NWLDKLRPEMQQERRGLLYESLVEERSRLKAEAAKSASVHADTMEIYNELNLFLSSYTMDSPIKLREEAEELDKRVVALMAKETQQARQEVNAVKSEIQI VMQEFDNLLRITIPEQYNTLIRKSEDRIASIVEVHSPASDLPGSGTNSRSYTPQLGEKVLVKSLGDKIATVVEAPGDDDVVLVQYGKIKVRVKKTEIRAT RGAKKISIASNSSRQVKRQVQQMDSESQTEKPKEGYSARVQTSRNTVDLRGMRVEAASLHLTAAIADREAQSVVFVVHGTGTGAVKKRTLEILAKHPRVT KYEPESPTNWGCTVAYIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	0	1
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	2.4	0.8836
AT5G51290			Diacylglycerol kinase family p...		Lus10016714 [exp]	2.8	0.8843
AT1G65070			DNA mismatch repair protein Mu...		Lus10018187 [exp]	2.8	0.8678
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	4.6	0.8831
AT2G46915			Protein of unknown function (D...		Lus10007214 [exp]	5.0	0.8634
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10041853 [exp]	7.3	0.8529
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10007468 [exp]	9.2	0.8468
					Lus10025603 [exp]	9.9	0.8051
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10038110 [exp]	9.9	0.8572
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	10.4	0.8483

Compare expression of checked genes

Lus10025647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.