Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04955 656 / 0 ATALN allantoinase (.1) AT5G12200 53 / 3e-07 PYD2 pyrimidine 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018186 [exp] 727 / 0 AT4G04955 648 / 0.0 allantoinase (.1) Lus10026817 [exp] 57 / 1e-08 AT5G12200 882 / 0.0 pyrimidine 2 (.1) Lus10036064 [exp] 45 / 9e-05 AT5G12200 776 / 0.0 pyrimidine 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G041800 [exp] 697 / 0 AT4G04955 669 / 0.0 allantoinase (.1) Potri.009G067700 [exp] 66 / 4e-11 AT5G12200 863 / 0.0 pyrimidine 2 (.1) Potri.001G273400 [exp] 64 / 1e-10 AT5G12200 857 / 0.0 pyrimidine 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF01979 [flax] [poplar] Amidohydro_1 Amidohydrolase family
Representative CDS sequence Show only first row Show all	>Lus10025648 pacid=23145023 polypeptide=Lus10025648 locus=Lus10025648.g ID=Lus10025648.BGIv1.0 annot-version=v1.0 ATGGCGGCTCTTCCCCTTGCTAGCTCTTCTCGCTTCCTTCCTCTACTTCTTCCACTACCACAGCTTCCTCAAGGCAACCTTCTCCCTCACAGCCACTACT GGATCGCCAGCAACCGCATCGTCACTCCAAACGGCGTCGTTTCCGGCGCAGTTGAGGTGAAGGGAGGGAAAATCGCGTCAATCGTTACGGGAGAGGATTG GAGAGGCGGTTCTAGGACGGGGAAAGTGATTGATTATGGAGAGGCAGTGGTAATGCCTGGATTGGTTGATGTACATGCTCATCTTGATGATCCAGGACGA GCTGAGTGGGAAGGGTTTCCTTCTGGTACTAAAGCAGCTGCTGCAGGTGGAATTACAACGTTGATCGATATGCCACTGAATAGTTTTCCATCAACTGTTT CGACTGAGACTCTTAGACTCAAGACGCAAGCTGCTGCAAATAACTTATACGTTGATGTGGGTTTCTGGGGCGGACTTGTTCCTGAGAACGCTTTCAATGC TACATCCCTTGAAGCTCTTCTAAGTGCTGGTGCCCTTGGGCTCAAGTCTTTCATGTACCCTTCTGGGATCAATGATTTCCCCATGACTAATGCCAGTCAC ATCAAGGCAGGACTAGCAGTACTGGCAAAATACAGAAGGCCATTGCTTGTACACGCGGAGAAGGAGCAAGATTTAGAAACTTTCTTAGCAGACGGTGAAA CCGACCCTCGTTCTTACTCAACTTACCTTAGTACTCGCCCACCGTCATGGGAGGAAGCAGCCATTAGAGATCTCTTGACGGTGTCGGTAGACACGAGACC CGGTGGCCCTGCAGAAGGAGCTCATCTTCACGTTGTCCATCTGTCAGATGCAGGTTCTTCATTAGAGCTTCTAAAGCAAGCAAAAGCTAGCGGCGATAGT TTAACTGTTGAGACGTGTCCTCATTACCTTGCTTTCTCGTCGGAAGAAATTGAAGATGGAGATACTCGTTTCAAATGTTCTCCACCCATACGTGATGCAG CAAACAAGGAAACGCTCTGGCAAGCCTTGCTGGAAGGAGACATAGACATGCTAAGTTCTGATCATTCCCCTACTGTTCCAGAGCTTAAGCTCCCTGAAGA AGGCAACTTCTTGAAGGCTTGGGGCGGTATATCATCTTTGCAGTATGTTCTTCCTGTGACATGGTCACATGGACGTAAGTACGGAGTAAGCCTTGAACAA GTGGCATCATGGTGGAGTGAAAGACCTGCTAAGCTCGCCGGCCTAGATTCGAAGGCCGACATTGCAGTATGGGAACCAGACGCCGAATTCGTCGTCAACG GGGATCATCCAGCATTCGTCAAGCACCCAAGTATCTCAGCATACATGGGCGCAAAACTGTCCGGGAAGGTACTGGCAACTTTCGTCGGAGGAAACCTCGT CTACGAAACTGGGAAGCACGCTTCTTCAGCCTGTGGCGCTACTCTTCTCGGTACTGCTCTCTAA
AA sequence Show only first row Show all	>Lus10025648 pacid=23145023 polypeptide=Lus10025648 locus=Lus10025648.g ID=Lus10025648.BGIv1.0 annot-version=v1.0 MAALPLASSSRFLPLLLPLPQLPQGNLLPHSHYWIASNRIVTPNGVVSGAVEVKGGKIASIVTGEDWRGGSRTGKVIDYGEAVVMPGLVDVHAHLDDPGR AEWEGFPSGTKAAAAGGITTLIDMPLNSFPSTVSTETLRLKTQAAANNLYVDVGFWGGLVPENAFNATSLEALLSAGALGLKSFMYPSGINDFPMTNASH IKAGLAVLAKYRRPLLVHAEKEQDLETFLADGETDPRSYSTYLSTRPPSWEEAAIRDLLTVSVDTRPGGPAEGAHLHVVHLSDAGSSLELLKQAKASGDS LTVETCPHYLAFSSEEIEDGDTRFKCSPPIRDAANKETLWQALLEGDIDMLSSDHSPTVPELKLPEEGNFLKAWGGISSLQYVLPVTWSHGRKYGVSLEQ VASWWSERPAKLAGLDSKADIAVWEPDAEFVVNGDHPAFVKHPSISAYMGAKLSGKVLATFVGGNLVYETGKHASSACGATLLGTAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04955		ATALN	allantoinase (.1)		Lus10025648 [exp]	0	1
AT3G54880			unknown protein		Lus10013824 [exp]	3.7	0.7426
AT1G69510			cAMP-regulated phosphoprotein ...		Lus10030448 [exp]	4.4	0.7785
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10024406 [exp]	7.3	0.7775
AT5G64550			loricrin-related (.1)		Lus10011515 [exp]	7.3	0.7674
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10015714 [exp]	11.0	0.7597
AT2G45210			SAUR-like auxin-responsive pro...		Lus10030295 [exp]	12.0	0.6545
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10026986 [exp]	15.3	0.7550
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008439 [exp]	16.2	0.7366
AT5G02510			unknown protein		Lus10024410 [exp]	18.0	0.7173
AT4G31130			Protein of unknown function (D...		Lus10030038 [exp]	19.8	0.6943

Compare expression of checked genes

Lus10025648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.