Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54200 145 / 1e-43 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 84 / 4e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G46150 72 / 2e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G13270 54 / 4e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G64450 48 / 1e-06 Glycine-rich protein family (.1) AT2G01080 45 / 8e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G23930 40 / 0.0004 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018185 [exp] 292 / 5e-102 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035612 [exp] 229 / 2e-76 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 228 / 5e-76 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032671 [exp] 194 / 7e-63 AT3G54200 141 / 1e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043084 [exp] 193 / 2e-62 AT3G54200 141 / 2e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006764 [exp] 95 / 3e-24 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018361 [exp] 92 / 2e-23 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020060 [exp] 92 / 3e-23 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007649 [exp] 92 / 4e-23 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142300 [exp] 208 / 1e-68 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 197 / 4e-64 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 86 / 3e-21 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 86 / 8e-21 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 85 / 3e-20 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 82 / 8e-20 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 79 / 4e-18 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 77 / 1e-17 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 66 / 2e-13 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098100 [exp] 65 / 5e-13 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10025649 pacid=23145133 polypeptide=Lus10025649 locus=Lus10025649.g ID=Lus10025649.BGIv1.0 annot-version=v1.0 ATGGCGGATTCCGACAAGAACAGGCGGAGAAAGCGCCGGAACATCTGCATGGGAGCCACGGCGGCGACGATCATCCTACTGATAATCATCGCCTTAATCC TCGCACTCACCGTATTCAAGGCCAAGCGCCCCGTCACCACGGTCAACAGCGTCTCAATCGACGACCTCGCCGTGTCCCTGGATCTAATCAAGCTCCGACC GCGGCTCAACCTAACTCTGGACCTCAATCTCGCGATCAAGAACCCCAACAAAGTCGGCCTCAAGTACTCCGACTCATCCGCCGCGCTCAATTACCGAGGA CTCCAGGTCGGAGAAGTTCCCATACCGGCGGGGAGGATACTGGCGGATTCGACCACGCCGTTGAACTTGACGCTTACACTCATGGCGGATAGGTTACTGT CCAACTCTCAGCTCTACACCGACGTCCTCTCCGGCGAAATGCGTCTCAATACGTATGCGAAGATCAAGGGGAAAGTGACTTTGTTTAATATCCGGGTAAC GTCGACTTCCACCTGTGATTTCACTGTGTTCCTCTCCAACCGGACTGTTGGGGATCAGACCTGCAACTACAAGTCTAAATTGTAG
AA sequence Show only first row Show all	>Lus10025649 pacid=23145133 polypeptide=Lus10025649 locus=Lus10025649.g ID=Lus10025649.BGIv1.0 annot-version=v1.0 MADSDKNRRRKRRNICMGATAATIILLIIIALILALTVFKAKRPVTTVNSVSIDDLAVSLDLIKLRPRLNLTLDLNLAIKNPNKVGLKYSDSSAALNYRG LQVGEVPIPAGRILADSTTPLNLTLTLMADRLLSNSQLYTDVLSGEMRLNTYAKIKGKVTLFNIRVTSTSTCDFTVFLSNRTVGDQTCNYKSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10025649 [exp]	0	1
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10038976 [exp]	18.8	0.7519
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	20.3	0.7450
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	21.2	0.7325
AT5G47060			Protein of unknown function (D...		Lus10019494 [exp]	34.1	0.7271
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10011901 [exp]	38.5	0.7092
AT4G17420			Tryptophan RNA-binding attenua...		Lus10007800 [exp]	43.4	0.6769
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	44.7	0.7199
AT4G26240			unknown protein		Lus10012919 [exp]	69.9	0.6905
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	81.6	0.6731
AT3G07070			Protein kinase superfamily pro...		Lus10022799 [exp]	83.1	0.6272

Compare expression of checked genes

Lus10025649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.