Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018184 [exp] 1036 / 0 AT5G41950 47 / 4e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G050600 [exp] 492 / 3e-165 AT5G41950 49 / 1e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025650 pacid=23144940 polypeptide=Lus10025650 locus=Lus10025650.g ID=Lus10025650.BGIv1.0 annot-version=v1.0 ATGAAAACTCCAGTCCTCAACTCAATTATCAAGTCCAGCTCCCACCTATCCCCTCCAATTTTCCTCTTCCACTTCCCATCCCGACACAACACTCATCTCC TCTACACTCCACATCGCAACCTCCGCTCCTCCACTATCCGATTCGCCGGAGCATCTCCGAACATTGCCGCAGCTACGAATAATTTCCGCGGCTGGGACGA TGTCCACCAGCTCAGCAGCGACTGGGCGAGCTCTGGTGAGTCATTCGAGCTCCGCGACTTCGTAGCATCTCTTGGAATCAGCGATAAGAAGTACGGATTC ACTTTTCTGCTAGGGATCGTGTTTGCTTTCGCGTTTTCCAGGGTTAAGGTTTCGTATATCGCTTTGGTTCCGGCTTCGGCTGTGGTGTTCGCCGCTGGAT TTTCTTTCGGATTTGTCCGCAGCGGTAGCGGATTTGATTTGCTTAGCGTCGGTAGAGTTAAGAAGAAGGGCAAGGAATCGACTAGTTCTAGGATTTATAA CGATGCTGTAGTGGAGTTTTTGAATGAGTTCGAGCTTAAGGTGAATGAATTGAAGAAGAGTTTATTTAGAGCTATTGATAGTAAGGAAATTAGGATGGAT GAACTGGAACGTTATGCTGATGTGATTGAATCAATGCAGACATCTGCATTGAACACTAGAAATGCTATCGAAACCGAGATTGATAGTGCTAAACATGATA ATCGTAGATTGCCAAGCAGAAGAAGCAAAAAGATTGGTGAGGTTGGTTCTGAATTTGTACAGTTTCTTGGAGGAATGTTTGGTGGCAGCAGAAAGGTTGT TAGTGCAAAACCTAGCAAGGTCAAAGAGAATGACCATCCTAAACAAGCCGATCCTGTTAGTTTGTCGAGTAATTGGGCTCCGGGAATCGAAGAACGTGTT TATAATGACTCCAAAAGTAGCAGCAGTAGTTTTGTTTCTTCTGGAGGTGCTTCCAGTAAGTTTGCTATGGACTGGGATGGAGAAAGGAGGATTAAAATCG TTTCGGAAAGTACAGAAATGGATCCAGAAGTAGTTCTTGAGGGCTCAAAGAGGTTTCCTGGTGGAGAGGAGGATTACAGGCAGAATCATCGTTCGTTTGC ACGAGACACCAGTTTCGAGGACTCTAACGGAGCATACAGCTTTCGAACCAGGGAGAGAAACAATGGAGAAACGTTTAGTTCTAGGTTCCGAGAAGAGAGA CTCAACGATGATGTGGAAGGCTCTTATTCGTCAGCAGTTTCAGATGATGCACCATTCAACAGGTATCTTACTGAGGCGAACAACCTGCTTAAAGAAGCCA AAGAGTGCATTAGAACGAGACAAGATGAAGAACATGGGGAAGTCATGTTATACAAGTCTTCTAAATTGCTGTCCAAGGCCATAGCTTTGAAGCCTATGAG TTTATTAGCCGTCGGCCAGCTGGGGAATACTTACCTTCTTCATGGAGAGCTGAAGCTGAAAATCAGCCGTGAATTGAGAGCCACCCTCTCGACATGGGGG CCCTTGTCTTTCGAGAATCAGGTTCCTTCAATGCGTGTGGAACGCGGTGAACTGAGACGGAAAGATAAGCTCGTGGAAGTACTTAGTAATGTGTGTGAAG AGTGTGAAGAACTTCTTGTGGAGGCTGGAAGAAACTATAGATTGGCGTTGTCGATTGATGGGAATGATGTTAGAGCGCTTTATAATTGGGGGCTTGCTTT AACGTTTCGTGCACAGTTGATTGCTGATATTGGACCCGAAGCTGCATTTGATGCAGACAAGTTGTTCTTGGCTGCCACTGATAAATTCGACGCTATGATG TCTAAAAGCAATGTCCACGCACCAGATGCATTGTTCAAATGGGGAGTGGTCCTGCAACAAAGATCTCGGTTGCGGCCTTCTAACAGTAGAGAGAAAGTGA AGCTTTTGCAACAGGCGAGAAGACTGTATGAAGACGCTCTGCATATGGACTCCGACAATGTTCAAGTTCGAGAAGCGCTTTTGTCGTGCACTTCTGAGCT CAGCCGCCGATCGTTCAGGTCGTTTTAA
AA sequence Show only first row Show all	>Lus10025650 pacid=23144940 polypeptide=Lus10025650 locus=Lus10025650.g ID=Lus10025650.BGIv1.0 annot-version=v1.0 MKTPVLNSIIKSSSHLSPPIFLFHFPSRHNTHLLYTPHRNLRSSTIRFAGASPNIAAATNNFRGWDDVHQLSSDWASSGESFELRDFVASLGISDKKYGF TFLLGIVFAFAFSRVKVSYIALVPASAVVFAAGFSFGFVRSGSGFDLLSVGRVKKKGKESTSSRIYNDAVVEFLNEFELKVNELKKSLFRAIDSKEIRMD ELERYADVIESMQTSALNTRNAIETEIDSAKHDNRRLPSRRSKKIGEVGSEFVQFLGGMFGGSRKVVSAKPSKVKENDHPKQADPVSLSSNWAPGIEERV YNDSKSSSSSFVSSGGASSKFAMDWDGERRIKIVSESTEMDPEVVLEGSKRFPGGEEDYRQNHRSFARDTSFEDSNGAYSFRTRERNNGETFSSRFREER LNDDVEGSYSSAVSDDAPFNRYLTEANNLLKEAKECIRTRQDEEHGEVMLYKSSKLLSKAIALKPMSLLAVGQLGNTYLLHGELKLKISRELRATLSTWG PLSFENQVPSMRVERGELRRKDKLVEVLSNVCEECEELLVEAGRNYRLALSIDGNDVRALYNWGLALTFRAQLIADIGPEAAFDADKLFLAATDKFDAMM SKSNVHAPDALFKWGVVLQQRSRLRPSNSREKVKLLQQARRLYEDALHMDSDNVQVREALLSCTSELSRRSFRSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10025650 [exp]	0	1
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10031476 [exp]	5.1	0.8597
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	8.1	0.8564
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	8.4	0.8522
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Lus10023714 [exp]	9.9	0.8433
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	10.0	0.8578
AT5G57460			unknown protein		Lus10007798 [exp]	12.3	0.8409
AT3G58050			unknown protein		Lus10029299 [exp]	12.4	0.8373
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002910 [exp]	13.0	0.8005
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10019313 [exp]	15.0	0.8270
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10024407 [exp]	15.3	0.8338

Compare expression of checked genes

Lus10025650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.