Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27460 300 / 4e-99 Cystathionine beta-synthase (CBS) family protein (.1) AT5G53750 278 / 4e-90 CBS domain-containing protein (.1) AT1G65320 99 / 1e-22 Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018183 [exp] 723 / 0 AT4G27460 298 / 3e-98 Cystathionine beta-synthase (CBS) family protein (.1) Lus10042702 [exp] 529 / 0 AT5G53750 278 / 3e-90 CBS domain-containing protein (.1) Lus10029665 [exp] 524 / 0 AT5G53750 283 / 2e-92 CBS domain-containing protein (.1) Lus10011457 [exp] 117 / 4e-29 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1) Lus10037535 [exp] 115 / 2e-28 AT1G65320 483 / 2e-170 Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G041000 [exp] 488 / 7e-173 AT5G53750 295 / 6e-97 CBS domain-containing protein (.1) Potri.011G050500 [exp] 464 / 2e-163 AT5G53750 261 / 1e-83 CBS domain-containing protein (.1) Potri.001G402900 [exp] 381 / 1e-130 AT5G53750 372 / 7e-127 CBS domain-containing protein (.1) Potri.011G122000 [exp] 372 / 6e-127 AT5G53750 355 / 6e-120 CBS domain-containing protein (.1) Potri.013G087100 [exp] 120 / 3e-30 AT1G65320 521 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.019G052650 [exp] 113 / 9e-28 AT1G65320 516 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025651 pacid=23145013 polypeptide=Lus10025651 locus=Lus10025651.g ID=Lus10025651.BGIv1.0 annot-version=v1.0 ATGGCAGATAGTTTGTTAGCTCGGGAGGTATCCGATCTATGCCTGGGGAAGCCTGCTCTGAGATCTCTAACCGCCTCCGCCACCGTCGCCCAAGCTCTCC TCGCTCTCCGCCGCTTCGGCGACTCGTACGTTAGCGTGTGGAGCTGCGACCACCGTCAGATCAAACTTCTCGATGTAGGCAGTGAATGCCGGTGCGTCGG CAAGGTTTGTATGGTTGACGTCGTCTGTTTCTTGGCTAGAGAAGAGAATCTCAAGAATCCGGCGATTGCTCTTCAGAAGCCATTGTCGTTTCTTCTCGAC GGCGTACCGTCTTGTATCGTGCGGCATTTGGAGCCTCACGCTAGTTTGTTGGAAGCGATAGATTTGATACTGGAAGGAGCGCAGAATCTGGTGATTCCGA TTCAGAGCCGATTCTCGTCAAGGAAGAAGATGATTCAGAGGAATTCCCTTTCCGTCAGCTCGACGGTGCACAACAACGGCGAGTACTGCTGGTTGACGCA GGAGGATGTGATCCGGTACCTCCTCAACTGCATCGGCTTCTTCTCTCCACTTCCTAGCCAAACAGTCGAGTCTCTGAACATCATCGATAAGGAATCAGTA TTGGCCGTCCGTTACGACGATCCAGCAGAGTCTGCTCTGCCGCTGATCTCCCAATCGCTGGCTAAACACACCTCCGTCGCGATTTTGGACGACGAAGGGA GACTGGTCGGGGAAATCTCGCCGGCTGCTCTAAACTACTGCGACGAGTCCGTGGCTGCAGCAGTCGCCACTCTTTCAGCGGGAGATCTGATGGCATATGT TGACTGCTGCGGCGATCCACCGGAGGAGCTGGTGCAGCTGGTGAAGGAGAGGCTGAAGGCGAAGAATCTGGAGGCGGCGGTGGAGTTGGTCGACGAAGAT TCGTCCTCGGGGCTGTCATCAGCATCATCGACATCGTCGTGCTCGTCTTCCGACGAGGAATTCGGCGGGAGAAGTGTTAATTGGAACTCGCCGAAAGTGG TGAGGAACACGGAGGACATCGTGTGCCATCCGTGGAGCTCGTTGGTGGCTGTGATGATCCAAACGCTGTCGCATCGGACTGGATACATTTGGGTGGTGGA AGACGACGGGTGCTTAGCCGGAGTTGTTACCTACGCGGCTATGACGAGAGTTTTCCGGGAACGGTTGAAATCAATGGCCTAG
AA sequence Show only first row Show all	>Lus10025651 pacid=23145013 polypeptide=Lus10025651 locus=Lus10025651.g ID=Lus10025651.BGIv1.0 annot-version=v1.0 MADSLLAREVSDLCLGKPALRSLTASATVAQALLALRRFGDSYVSVWSCDHRQIKLLDVGSECRCVGKVCMVDVVCFLAREENLKNPAIALQKPLSFLLD GVPSCIVRHLEPHASLLEAIDLILEGAQNLVIPIQSRFSSRKKMIQRNSLSVSSTVHNNGEYCWLTQEDVIRYLLNCIGFFSPLPSQTVESLNIIDKESV LAVRYDDPAESALPLISQSLAKHTSVAILDDEGRLVGEISPAALNYCDESVAAAVATLSAGDLMAYVDCCGDPPEELVQLVKERLKAKNLEAAVELVDED SSSGLSSASSTSSCSSSDEEFGGRSVNWNSPKVVRNTEDIVCHPWSSLVAVMIQTLSHRTGYIWVVEDDGCLAGVVTYAAMTRVFRERLKSMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27460			Cystathionine beta-synthase (C...		Lus10025651 [exp]	0	1
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Lus10006181 [exp]	15.2	0.7314
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	16.2	0.7397
AT2G19130			S-locus lectin protein kinase ...		Lus10033748 [exp]	16.7	0.6127
AT3G45090			P-loop containing nucleoside t...		Lus10021446 [exp]	21.0	0.6885
AT1G34380			5'-3' exonuclease family prote...		Lus10006622 [exp]	25.5	0.6748
AT2G20390			unknown protein		Lus10024957 [exp]	25.7	0.6774
AT4G33070			Thiamine pyrophosphate depende...		Lus10018181 [exp]	29.3	0.6524
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	36.5	0.6596
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10028323 [exp]	37.3	0.5667
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10024943 [exp]	42.1	0.6708

Compare expression of checked genes

Lus10025651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.