Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21110 568 / 0 PUR7, ATPURC PURIN C, purin 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018182 [exp] 736 / 0 AT5G36230 623 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G051500 [exp] 612 / 0 AT3G21110 592 / 0.0 PURIN C, purin 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01259 [flax] [poplar] SAICAR_synt SAICAR synthetase
Representative CDS sequence Show only first row Show all	>Lus10025652 pacid=23144942 polypeptide=Lus10025652 locus=Lus10025652.g ID=Lus10025652.BGIv1.0 annot-version=v1.0 ATGAGAACCCTAAACCCTCCCAAAGCCCTTGTAAGCAACAAAGAGAGGCTTTTGTTTCCCAGTTCTGTGTCTTCTTCTTCTTCCGCTGCTTCAGTCTCTT CATTCCAGCCGAAGCCCAGGCGAATATCTGGAAGAATCTCTACCTCTGCAATGCTGCAGCCCATGAGGAGTGAGCACAAGCTGGATGATAAACTGACTAT GGATGCCATGTTCGATGGCGGCCGCAAAAAAGAGGTTATTGGTGCTATTAAGGGCGGCTTGTCCAATTGCCTTTCCGAGACGAATCTTCATTTGACTGTT CCTGGCCTCAAATCCAAAGTTAGAGGAAAGGTGAGGGATATCTATGATGCTGGAGAGTACCTTGTTCTAATAACTACTGATAGGCAGAGTGCATTCGATC GAGTTCTTGCTTCCATTCCTTTCAAAGGGCAGGTTCTTAATCAGACTAGCCTATGGTGGTTTGATAGAACATCTCATATAACTCCCAATGCTGTTGTTTC TGTTCCTGATAAGAATGTCACAATTGCCAGAAAATGTTCTGTCTTCCCTGTTGAATTCGTAGTTAGAGGATTTGTGACAGGAAGTACCGATACATCGTTG TGGACGGTATACAATAAAGGTGTTCGGAACTATTGTGGCAATGCTTTACCTGATGGCCTGGTGAAAAACCAAAAGCTACAAGCAAATATACTAACTCCAA CAACTAAGGCTGCGGATCATGATGTCCCGGTAACTCCAGAAGAGATAATCAAACTTGGACTAATGACGGAAGCTGAGTACACTGAAGCCAGTGAGAAAGC ATTGAGGTTATTTGAGTATGGTCAGTGCGTGGCTTTGGAACACGGCTTAATATTGGTGGACACGAAATACGAGTTCGGAAAAGGCTCGGATGGTTCAATT CTATTGATAGACGAGGTGCACACACCCGACTCAAGTAGATACTGGATAGCTCATTCTTACGAGGAACGTTTTCAGAACAGCCTTGAACCTGAAAACGTTG ATAAGGAGTTCTTGAGGTTGTGGTTCAAGAATCACTGCAATCCATATGAAGACAAGGTACTCCCTGATGCTCCAGAAGAACTTGTCACCGAGCTAGCTTG GCGGTACATATTCTTGTACGAGACGATAACGAATTCGAAATTCGACCCACCACCGATCGAGGAACCGGTTCATGACAGGATATCGAGAAATGTTGAGCTA GCCTTATCAGCCCTGAAGTGA
AA sequence Show only first row Show all	>Lus10025652 pacid=23144942 polypeptide=Lus10025652 locus=Lus10025652.g ID=Lus10025652.BGIv1.0 annot-version=v1.0 MRTLNPPKALVSNKERLLFPSSVSSSSSAASVSSFQPKPRRISGRISTSAMLQPMRSEHKLDDKLTMDAMFDGGRKKEVIGAIKGGLSNCLSETNLHLTV PGLKSKVRGKVRDIYDAGEYLVLITTDRQSAFDRVLASIPFKGQVLNQTSLWWFDRTSHITPNAVVSVPDKNVTIARKCSVFPVEFVVRGFVTGSTDTSL WTVYNKGVRNYCGNALPDGLVKNQKLQANILTPTTKAADHDVPVTPEEIIKLGLMTEAEYTEASEKALRLFEYGQCVALEHGLILVDTKYEFGKGSDGSI LLIDEVHTPDSSRYWIAHSYEERFQNSLEPENVDKEFLRLWFKNHCNPYEDKVLPDAPEELVTELAWRYIFLYETITNSKFDPPPIEEPVHDRISRNVEL ALSALK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21110		PUR7, ATPURC	PURIN C, purin 7 (.1.2)		Lus10025652 [exp]	0	1
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10019634 [exp]	9.2	0.9067
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	9.3	0.9115
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	14.7	0.9003
AT5G55200		MGE1	mitochondrial GrpE 1, Co-chape...		Lus10010247 [exp]	16.5	0.9005
AT2G04400			Aldolase-type TIM barrel famil...		Lus10012310 [exp]	19.3	0.9071
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Lus10035112 [exp]	23.6	0.8594
AT5G23300		PYRD	pyrimidine d (.1)		Lus10024096 [exp]	26.9	0.8982
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10033470 [exp]	28.6	0.8653
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10030113 [exp]	38.8	0.8982
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	39.0	0.8995

Compare expression of checked genes

Lus10025652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.