Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09620 567 / 0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT2G31170 43 / 0.0003 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024704 [exp] 671 / 0 AT1G09620 1696 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10032321 [exp] 408 / 4e-141 AT1G09620 648 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10032320 [exp] 72 / 2e-13 AT1G09620 882 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10001953 [exp] 43 / 0.0002 AT2G31170 305 / 5e-102 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001921 [exp] 42 / 0.0008 AT2G31170 831 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G226700 [exp] 607 / 0 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.003G003900 [exp] 593 / 0 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF09334 [flax] [poplar] tRNA-synt_1g tRNA synthetases class I (M)
Representative CDS sequence Show only first row Show all	>Lus10025653 pacid=23145030 polypeptide=Lus10025653 locus=Lus10025653.g ID=Lus10025653.BGIv1.0 annot-version=v1.0 ATGCCGTCTGCTCTCTCCCGGTGGCTATTAACTACTGCTCGAAGGTCAGGGTCAGGTGATGAATGTATCGTGGCACTTACTGATCAATGGTACATAATCT ATGGAGAAGCGGAGTGGAAGAAGTTGGCCGAAGAATGCTTAAGTAACATGAACTTGTATTCTGATGAGACACGGCATGGTTTTGAGCACACTTTGAGCTG GCTGAATCAGTCTGCTTGTTCGAGATCGTTCGGTCTTGGGACTCGCATTCCCCGGGATAAAGAATTCCTCGTCGAATTCTTGTCTGACTCTACTATTTAC ATGGCGTACTATACTGTTTCGCATTTCCTACATAATGACGACATTTATGGTATCAACAAATCTCATCCCATTCAGCCTTCGCAAATGATTGATGAAGTAT GGGACTTTATTCTCTGTGACGGTTCATTTCCTGAATCTTCTGATATCCCAGCAGCTGCCCTTGGAAAAATGAAGAGGGGATTTAACTACTGGTATCCCTA CGATTTGCGGGTCTCTGGAAAGGACCTTATCCAGAATCATTTGACATTCTCTATATACAATCACGTAGCAATCATGGCTAAGAAACACTGCCCTCGTGGA TTCAGGTGTAACGGGCATCTCATGCTCGATTCCGAGAAAATGTCCAAGTCGACTGGAAATTTCTTAACACTAAAAGAGGCTATCAAGAAATACTCTGCTG ATGCCACGAGATTCTCACTTGCTGATGCTGGAGAGGGTGTTGATGATGCTAACTTTGTGCATGATACGGCCAATTCTGCTATCCTTCGGCTTACCAAAGA GATTACGTGGATCGAAGAAGTTCTAGCTGCGGAACCCTCTCTGAGGACAGGGCCTCTGTCAACTTATGCCGATAAGGTGTTTGAGAACGAGATAAACATT GCAGTTAAGATGACTGAAAAGAATTACAACGATTGTATGTTCAGAGAAGCACTGAAGACCGGATTCTACGATCTCCAAACGGCCAAAGACGAGTATAGAT TCTCGTGTGGCAGCGGTGAGATGAACCGTGACCTGGTTTTCCGGTTTATGGATGTGCAGACTCGCCTCATCACTCCGATTTGTCGGCACTATGGAGAATA TGTATGGAGGGAGCTTTTATAG
AA sequence Show only first row Show all	>Lus10025653 pacid=23145030 polypeptide=Lus10025653 locus=Lus10025653.g ID=Lus10025653.BGIv1.0 annot-version=v1.0 MPSALSRWLLTTARRSGSGDECIVALTDQWYIIYGEAEWKKLAEECLSNMNLYSDETRHGFEHTLSWLNQSACSRSFGLGTRIPRDKEFLVEFLSDSTIY MAYYTVSHFLHNDDIYGINKSHPIQPSQMIDEVWDFILCDGSFPESSDIPAAALGKMKRGFNYWYPYDLRVSGKDLIQNHLTFSIYNHVAIMAKKHCPRG FRCNGHLMLDSEKMSKSTGNFLTLKEAIKKYSADATRFSLADAGEGVDDANFVHDTANSAILRLTKEITWIEEVLAAEPSLRTGPLSTYADKVFENEINI AVKMTEKNYNDCMFREALKTGFYDLQTAKDEYRFSCGSGEMNRDLVFRFMDVQTRLITPICRHYGEYVWRELL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10025653 [exp]	0	1
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10015864 [exp]	1.0	0.8654
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012472 [exp]	2.4	0.8331
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	4.5	0.8453
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10029294 [exp]	5.3	0.8525
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10034868 [exp]	5.5	0.8148
AT1G27060			Regulator of chromosome conden...		Lus10010038 [exp]	13.2	0.7249
AT3G51650			unknown protein		Lus10009098 [exp]	15.4	0.8481
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10018580 [exp]	15.7	0.8327
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	16.3	0.8392
AT4G02720			unknown protein		Lus10022052 [exp]	17.7	0.8227

Compare expression of checked genes

Lus10025653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.