Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54960 672 / 0 PDC2 pyruvate decarboxylase-2 (.1) AT4G33070 666 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01320 663 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01330 651 / 0 PDC3 pyruvate decarboxylase-3 (.1) AT3G48560 49 / 6e-06 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018181 [exp] 1027 / 0 AT4G33070 683 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10003384 [exp] 688 / 0 AT5G54960 1068 / 0.0 pyruvate decarboxylase-2 (.1) Lus10002217 [exp] 683 / 0 AT5G54960 1061 / 0.0 pyruvate decarboxylase-2 (.1) Lus10005048 [exp] 659 / 0 AT5G54960 1067 / 0.0 pyruvate decarboxylase-2 (.1) Lus10027820 [exp] 645 / 0 AT5G54960 1058 / 0.0 pyruvate decarboxylase-2 (.1) Lus10015291 [exp] 642 / 0 AT4G33070 978 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10016751 [exp] 65 / 1e-10 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 47 / 2e-05 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10029955 [exp] 47 / 6e-05 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120100 [exp] 674 / 0 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.006G102500 [exp] 667 / 0 AT5G01320 1023 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.011G064000 [exp] 645 / 0 AT5G01320 962 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.017G151900 [exp] 634 / 0 AT5G01320 959 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.004G054100 [exp] 633 / 0 AT4G33070 949 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.012G098300 [exp] 62 / 9e-10 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [flax] [poplar] THDP-binding PF02776 [flax] [poplar] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL0085 [flax] [poplar] FAD_DHS PF00205 [flax] [poplar] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain
Representative CDS sequence Show only first row Show all	>Lus10025654 pacid=23144985 polypeptide=Lus10025654 locus=Lus10025654.g ID=Lus10025654.BGIv1.0 annot-version=v1.0 ATGCAAACTCTTTTCTTGTGTTTTCTAATTATACATCTCCCGGCCGGAACTCTCGCTCTCTCTTCGGCCTTGGAAATCTTCACCAAGCTCCACTCCCATA TTACTCCACTTTCCAGCTCCACTTCACTTCACTCCACTACACAAACCACTCCTCTCATATCGCCGTACTCCGTCGCCACGACAGTCACCGTTGCCGTCAT GTGTTCCTCAGCCGACCCAACGATAGGCCGCCACCTGGCCCGGCGCCTCGTCCAGATCGGAGTCACCGACGTGTTCTCCGTCCCGGGCGACTTTAACCTG ACACTCCTCGACCACCTAATCGCCGAGCCACGCCTCAATTTGATCGGCTGCTGCAACGAGCTCAACGCCGGATACGCCGCCGACGGCTACGCCAGATCCC GCGGCGTCTCCGCTTGCGTTGTCACGTTCACAGTAGGCGGCCTCAGCGTCATCAATGCCATCGCTGGAGCCTACTCGCGTAACCTCCCTGTAATCTGCAT CGTCGGCGGGCCAAACTCCAATGACTACGGCACCAATCGGATCCTCCACCACACGATCGGACTCCCGGATTTCACGCAGGAGCTCCGCTGCTTCCAGGCC GTTACCGCCTTTCAGGCGGTGGTGAATCATCTGGAAGACGCGCATGAGCTGATCGACAGAGCGATTTCGACTGCTCTGAAGAAGAGCAAGCCGGTTTACA TCAGCATCAGCTGTAACCTTCCAGCGATTCCTCACGCCAGCTTCCTCGGCGAGGATCCAGTTCCGTTCTCGCTTATTCCAAAGGTGAGCAATCAGATAGG ACTCGAAGCTGCCGTGGAAAAGGTGAGCAAGAAGATAGGACGCGAAGCTGCCGTGGAAGCGGCAGCTGAGCTGCTCAATGCAGCTGCCAAACCGGTCTTG ATCGGCGGTCCAGAAATCAGACTTACAAATTCACGCAAGGTGTTTGTTGAATTGTCTGACACTTGTGGCTACGCAATTGGCGTGGTTCCTTCAGGCAAAG GCTTGGTGCCAGAGGACCATCCGAAGTTCGTCACCACAGGAAGCGAGATTGTCCAATCCGGTGCCGATGCTTATCTGTTAGTCGGAGTGCCGGTCTACAA TGACCTTGTAGTTGCTAAGCAGGAGATGGCTGTAATCGTGCAGCCAGAACGCATCGCCATTGGTAATGGACCTGCATTCGGATGTATCGTGATGAACGAA TTCCTCACCGCTCTTATCGAAAAGCTCAAGCCAAACAGCGCTGCCTACGAAGAGCACGCAAACAGCTCCAAACCGGAACAGGAAGAACACGGTGATGGTG ATCAAGAGAACCCCACAGACCATGTGAAGGCGAAGGTGTTGTTCAAACACTTGGAGAAGATGTTGTCAAGCGAAACTGCTCTGATTGCCGAGACAGGGGA ATGGTGGAAGTTTACTCAAAAGCTCAAGCTACCGAATGGGTGTGGATACGAATACGGATCCTCGATGGGTTGGTCACTCGGGGCGAGTCTCGGGTACGCT CAGGCTGATCCAAAGATGCGAGTGATTGCTTGTGTCGAGGATAGGAAGTTCCAGAAGACTGTTCAAGATGTTTCGACGATGATCAGGTGCGGTCAGAAGA GTATCTTCTTCGTCGTGGTGCTGATCAATGAGAACAATTATTGCTGTAAGAGGTGGGACTATACAGGAATTGTTGATGCGCTACATAACGGGGAAGGGGA TTGCTGGACAACGAAGGTCAGTTGCGAAGAGGAGCTCGTGCAAGCGATCGAGGCTGCTACGGGTGAGAAGAAAGACTGTATGTGCTTCATCGAGGTCGCC GTTGGTCATGAAACAGTTGAGCCAAATCCAGCAAGCTAA
AA sequence Show only first row Show all	>Lus10025654 pacid=23144985 polypeptide=Lus10025654 locus=Lus10025654.g ID=Lus10025654.BGIv1.0 annot-version=v1.0 MQTLFLCFLIIHLPAGTLALSSALEIFTKLHSHITPLSSSTSLHSTTQTTPLISPYSVATTVTVAVMCSSADPTIGRHLARRLVQIGVTDVFSVPGDFNL TLLDHLIAEPRLNLIGCCNELNAGYAADGYARSRGVSACVVTFTVGGLSVINAIAGAYSRNLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA VTAFQAVVNHLEDAHELIDRAISTALKKSKPVYISISCNLPAIPHASFLGEDPVPFSLIPKVSNQIGLEAAVEKVSKKIGREAAVEAAAELLNAAAKPVL IGGPEIRLTNSRKVFVELSDTCGYAIGVVPSGKGLVPEDHPKFVTTGSEIVQSGADAYLLVGVPVYNDLVVAKQEMAVIVQPERIAIGNGPAFGCIVMNE FLTALIEKLKPNSAAYEEHANSSKPEQEEHGDGDQENPTDHVKAKVLFKHLEKMLSSETALIAETGEWWKFTQKLKLPNGCGYEYGSSMGWSLGASLGYA QADPKMRVIACVEDRKFQKTVQDVSTMIRCGQKSIFFVVVLINENNYCCKRWDYTGIVDALHNGEGDCWTTKVSCEEELVQAIEAATGEKKDCMCFIEVA VGHETVEPNPAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10025654 [exp]	0	1
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	9.9	0.8729
AT5G42120			Concanavalin A-like lectin pro...		Lus10029769 [exp]	10.4	0.8491
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	12.5	0.8665
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10006232 [exp]	17.4	0.8608
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	18.4	0.8634
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10011244 [exp]	19.4	0.8519
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	19.9	0.8603
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	20.9	0.8586
AT3G02750			Protein phosphatase 2C family ...		Lus10022683 [exp]	26.7	0.8528
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	29.5	0.8550

Compare expression of checked genes

Lus10025654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.