Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77600 899 / 0 ARM repeat superfamily protein (.1.2.3) AT5G47690 494 / 2e-149 binding (.1.2.3) AT4G31880 117 / 2e-26 unknown protein AT1G80810 109 / 7e-24 Tudor/PWWP/MBT superfamily protein (.1.2) AT1G15940 104 / 2e-22 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018180 [exp] 2333 / 0 AT1G77600 864 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10039082 [exp] 505 / 5e-153 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10038777 [exp] 457 / 7e-136 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10017121 [exp] 109 / 8e-24 AT4G31880 473 / 2e-152 unknown protein Lus10018332 [exp] 107 / 5e-23 AT4G31880 464 / 2e-149 unknown protein Lus10002307 [exp] 76 / 8e-14 AT4G31880 214 / 4e-61 unknown protein Lus10026078 [exp] 71 / 3e-12 AT4G31880 228 / 1e-66 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G084300 [exp] 1234 / 0 AT1G77600 1136 / 0.0 ARM repeat superfamily protein (.1.2.3) Potri.016G005400 [exp] 488 / 8e-147 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 486 / 5e-146 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.006G263300 [exp] 119 / 6e-27 AT4G31880 424 / 8e-133 unknown protein Potri.018G020400 [exp] 113 / 5e-25 AT4G31880 389 / 3e-120 unknown protein Potri.001G046500 [exp] 103 / 5e-22 AT4G31880 267 / 1e-76 unknown protein Potri.018G109600 [exp] 81 / 4e-15 AT4G31880 180 / 3e-47 unknown protein Potri.003G181300 [exp] 81 / 6e-15 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.006G186700 [exp] 79 / 2e-14 AT4G31880 167 / 8e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025655 pacid=23145021 polypeptide=Lus10025655 locus=Lus10025655.g ID=Lus10025655.BGIv1.0 annot-version=v1.0 ATGGACGCTACTCCTCTGAAACGTGTCTCCGAAGTAGGCGCCGAGCTCAGCCGTCTCACTCGCCCCGGCAAGGATACTCTCATCAAGTTACTCCGAGATG GGGCGGATGCCTTAGCTCGAATTGAGCACACTTCGTTCCTCGAGAATTCGGCTAAAGCCGAAGCTCATAAGAAGCAAGCAACTGCGCTGAAACCACTGAA GGAATCCATAGTTAAGCGCGGTCTTCAGCGCCATACTGACAGAGATGTCAAGCTCTTGGTGTCCGTCTGTGTCGCTGAGCTGTTCCGCATTCAAGCGCCG GAGACTCCGTTTGCTGATAAGTATCTCGGAGATGTTTTCAAACTGCTGCTCGGTACGTTCTCGGAGCTTGCTGACGTTGATAGCCCTTACTTTGGGAAGA GGGCCGGCGTTTTGGAGGCTGTAGCTAGATGCGAATGCTGTGTGATAATGCTGGATATCGGTTGTGGAGATTTGGTTGTCGAGATGTTCAATATTTTTTT CTCAGTTGCGAGGGGACATCGTGGTAGTAGCGTGGAGAGGAATATCTTGCATATAATGTCTCGCATCTTAGACGAGGAGCCTTCTCAAAGACTTGTAGAT ATAATTCTACAGAATCTAATAAAGGAAGAAGAGGGTCCGTCACGGCTTGCTGTTTCAATTATCAACAAGTTTCATGATACACTTAAGCCTTCCATTTGTC GCTTCTTGAGTTCTTGCTTCTTGGAAAGAGATGCAGTTGAAAGTGAAGTAAAAGAATCTTACCATGATATATTATTTCAAGTTTACAAACACGAGCCTGA GATGCTTCTTAATGTCATCCCTTACCTGACTGAAGAACTACGGACTGACCAGGTTGATGTCCGATTAAAAGCTGTCACTTTGCTTGGGAAACTACTTGCT CTACGTGGGGACCATTTTGCTCAGCAACACCACAGCGTTCTCATGGAGTTCAAGAACAGGTTTTCTGATAAATCTGTGGGAGTTAGACTCAGTGCCCTTC AATGTGCCAAAGCCAGTTACATTGCCAATCCACGGGGAAAATTATCAGAAGAGATTCTTGGCAAGTCCTTTTCCGCATTTGAGGGACGATTGTTGGACTT CAGTGACGATCTCTCTGTTAGAAAGAAGGCCTTGGTGAAGTTGATGGAATTATATCGAGATTATTGCAGCAAATGTTCCGAACGGCGTATGGCTATTGAA GATCACTTTGAACAGATTCCTCCTAAAGTTTTGATGCTATGGCATATAGACAGTAAGGAGTTCAGGTTCCAAATTGTGGAGCGTGTTCTTGGCGAGGACT TATTTCCAGCTAATCTTTCTGCGGAAGAGAGGAGCAAACATTGGGTTCATATAGTTTCTCTTTTCACTCCTCCACACTGGAAGGTCCTGTCCTCTGTTCT GTCTCAGAAAAACAGATTACAGACAGATATGCGAACTTATTTATCTTTGAGAATGAAAGCAAAGGGGACTGGTTTGGAAGTGATGGAGGGTAAAATAAAA AAGTTAGTCATAAATATGTCAGCGTTGTTTCCTGATCCCTCCAAGGCTGCAGAATGCTTTAATAGTTTGAACCAAATGAAAGACTGCAATATTTTCAGTA CCCTGGAGTTACTACTAAAAGATTCGATGATTACTGACGTGCAAGTGAATAGGGATAAATTTCAGAAAGTGATTGGAGACAAACATCCACAACATGATTT TCTACAATTACTTTCTTCTAAGTGTTCTTTTACCATATTCAACTCAGAGATAATACGCTGTATCTTGGTTAATATTTCCAGCAACGTGCTTAACAGCAAG CAAAAGGAGGCTTCTGCTAAACTCCTTATGGCCGTCATCAGTGCTTTCCCCTTTCTTTTAAGGGGTTCAGAAAAGGAAGTTCAGATGCTGTTGGGCGATA ATACTCTCACAGCAGTGCTGATTGAAGTACTTGCAAAAGCGGGTTCCCACTTATCTGCCAACTTGAGTGATTTCTACCCGTTTCTTAGGAAAGTGTCTTT AGAAGGAACTCGTGTTCAGGCGAAGCATGCCGTTTCAGCATTTGTTTCACTGGCTGGTTCTTCCGAGCAAGCTGCTCTATCACAACTTTGTGAGGAACTT GTCAACTCTCTTCGTTGTGGGTGGAACACTTCAACTGTGTTACAGTCTCTGGGCTGTATTATGCTGCATTCTGTATCAGCATCTGAGATACATGGTGAAG AGATCAGATCGTATATATTTGATATAATTTTCAAATTGAATCAATCTGACGATCCAATGTGTTCTGGGGAGATGTTGAACTGCACTGATTCCTGTAAGCT GAAGATTTTTGCACTGAAAACACTTGTCAGGAGCGTTCTACCAGGGCAAGGATCTCTTTTAAAATGGAAAATTAATGAAATGCTGGGTCTTTTGTTGAAG ATGCTACGGACAGGTGACACTTCTGATGGAGTCGTATCATGTGCAAGTGACAAGCCTTATATCCGATTAGCTGCTGCAAAATCTATTCTCCAGCTCTCGA AGAGATGGGATTTACATATTTCTCATAAGATATTTCAGTTGACAATATTAATGGCAAAGGACCCTTCTCCTGTAGTTAGAAGATTATTCCTTTACAAAAC GCACAAGCTATTGACGAATCATGCTATACCTAGTAGGTATGCATGTGCATTTGCATTGGCTGCATGTGGTCCCTGTGAAGATCTGCGTGAAGCTTCGTTT AAATACATGAGAGACTTTATCAAATATTACGTAAGAATATCCCAATTTAAGCAAACGTCAGTGGGGCAAAGAGAATCCCCTACAGATGACCCTGCATTTA TGGTTTTTTTCTTGATCCACATTCTTGCTCATGATGACGGCTTCCCACATGAGGATTGCCAAGATGAGCAAGTTTATGCTCGGTTCTGTAGTCCACTCTT TTGGGCTATACAGGAATTAACAAGGTCAACTAATGCAAACGGCAGCTTGGATTTTGCTGATTATACCATCCTACGTTTGCTCTCTGTCTTCCGCGCAATC AAAAGAGCAGAAGATGCTGTTGATCCTCAAGGCACTCCCAAACTGCAAATTCTAGCAGATATTGGGATCTCCATTGTGAACTCATTGCGGCATAAAGGCA AGTCTGTATCACAGACGCCAGGACCAGTTTTGCTGCCATCATCATTATATAAATTAAGTCCAGTTAACTTGAAACGCATCAGCAGCTCCGCCGATCGTCA AAATTTCTTCAGCCGGCTTATTCCAATTCTGAAGTCCGAAGTAGTCATCCCTGCCGAGACTTCTAATAAACGTGGTAGAGATTGTCATGAGGATAAGCTG CATTCTGGAGATGTTGAGTTTAGTACTTCACTAAGTTCGGAATTGCGCGAGCCTATCCATTTGCAAAATCTGATTTCTACAGAAGTCCAGGCAACAGTGG CTGGGGATTTCAGCTTGGGACGTTTATTAGAAGAAGCTCTTTCACCCACCTCTGAATCTGACCAATTATACAGTGATGACACTTCAACAGAGGTCAACCA AGGTCGTGCCTGTAAGTTTCAAAAGCCCACATTCTCCAGTTCGCCCATATTGTCTGGTTCTGCAATTGCCACGCCTTCTGTGCTGCAGTGTGATGTACTA CAGCAAAAGTCGGGCGGAAATGTTTCATCGTTGCAAGTGACTAGCGGTACTGCTGATAATAGTGCGGAGATGGAGTTGATACGTTTGGATGATGAAACAT GCAATAATGCTAAGAGTAATTCCTCGACAGAAAAGGAGAATATGTTGGGGGAGGATTCAACTACTAAACAATCAAATCACTGTGAACTCCTGGCTTGCTC TTCTCAGAGTGTACTGAAAGAGACGACTAAGAGTGTACCGAAAGAGACGACTAAGAGTATACTGAAAGAGACGACCAATAGTATACTGAAAGAAACGACT AATACCAGTGGGGTCGATGCCAGGAAGCCACCAAAAAGGTTGCCAAACCAAGAAGAAGCAAAGGGAAACAAAGGAGGCAAAGTTCTCCCCAAGACAACTT CATCAGACGAATCGCAGGTAACATTTCTATCTCGAATCGTTTTCCCCCCTGTTATGGATCGTGTCGATAGCCTGATGTTCGTTGGGTGTCGATTTCAGGT TGTTAGAAGGTCTAAGCGATTGAGAAAATGA
AA sequence Show only first row Show all	>Lus10025655 pacid=23145021 polypeptide=Lus10025655 locus=Lus10025655.g ID=Lus10025655.BGIv1.0 annot-version=v1.0 MDATPLKRVSEVGAELSRLTRPGKDTLIKLLRDGADALARIEHTSFLENSAKAEAHKKQATALKPLKESIVKRGLQRHTDRDVKLLVSVCVAELFRIQAP ETPFADKYLGDVFKLLLGTFSELADVDSPYFGKRAGVLEAVARCECCVIMLDIGCGDLVVEMFNIFFSVARGHRGSSVERNILHIMSRILDEEPSQRLVD IILQNLIKEEEGPSRLAVSIINKFHDTLKPSICRFLSSCFLERDAVESEVKESYHDILFQVYKHEPEMLLNVIPYLTEELRTDQVDVRLKAVTLLGKLLA LRGDHFAQQHHSVLMEFKNRFSDKSVGVRLSALQCAKASYIANPRGKLSEEILGKSFSAFEGRLLDFSDDLSVRKKALVKLMELYRDYCSKCSERRMAIE DHFEQIPPKVLMLWHIDSKEFRFQIVERVLGEDLFPANLSAEERSKHWVHIVSLFTPPHWKVLSSVLSQKNRLQTDMRTYLSLRMKAKGTGLEVMEGKIK KLVINMSALFPDPSKAAECFNSLNQMKDCNIFSTLELLLKDSMITDVQVNRDKFQKVIGDKHPQHDFLQLLSSKCSFTIFNSEIIRCILVNISSNVLNSK QKEASAKLLMAVISAFPFLLRGSEKEVQMLLGDNTLTAVLIEVLAKAGSHLSANLSDFYPFLRKVSLEGTRVQAKHAVSAFVSLAGSSEQAALSQLCEEL VNSLRCGWNTSTVLQSLGCIMLHSVSASEIHGEEIRSYIFDIIFKLNQSDDPMCSGEMLNCTDSCKLKIFALKTLVRSVLPGQGSLLKWKINEMLGLLLK MLRTGDTSDGVVSCASDKPYIRLAAAKSILQLSKRWDLHISHKIFQLTILMAKDPSPVVRRLFLYKTHKLLTNHAIPSRYACAFALAACGPCEDLREASF KYMRDFIKYYVRISQFKQTSVGQRESPTDDPAFMVFFLIHILAHDDGFPHEDCQDEQVYARFCSPLFWAIQELTRSTNANGSLDFADYTILRLLSVFRAI KRAEDAVDPQGTPKLQILADIGISIVNSLRHKGKSVSQTPGPVLLPSSLYKLSPVNLKRISSSADRQNFFSRLIPILKSEVVIPAETSNKRGRDCHEDKL HSGDVEFSTSLSSELREPIHLQNLISTEVQATVAGDFSLGRLLEEALSPTSESDQLYSDDTSTEVNQGRACKFQKPTFSSSPILSGSAIATPSVLQCDVL QQKSGGNVSSLQVTSGTADNSAEMELIRLDDETCNNAKSNSSTEKENMLGEDSTTKQSNHCELLACSSQSVLKETTKSVPKETTKSILKETTNSILKETT NTSGVDARKPPKRLPNQEEAKGNKGGKVLPKTTSSDESQVTFLSRIVFPPVMDRVDSLMFVGCRFQVVRRSKRLRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77600			ARM repeat superfamily protein...		Lus10025655 [exp]	0	1
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	1.7	0.9655
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Lus10006888 [exp]	2.0	0.9624
AT3G10180			P-loop containing nucleoside t...		Lus10010441 [exp]	2.6	0.9568
AT1G20060			ATP binding microtubule motor ...		Lus10033133 [exp]	4.2	0.9609
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	6.3	0.9601
AT1G04650			unknown protein		Lus10023676 [exp]	8.5	0.9153
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	10.7	0.9569
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10019338 [exp]	12.3	0.9442
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	12.4	0.9513
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10028795 [exp]	12.7	0.9443

Compare expression of checked genes

Lus10025655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.