Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08320 359 / 1e-121 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 100 / 1e-22 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT4G12400 86 / 5e-18 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT5G09420 82 / 1e-16 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT3G17970 78 / 2e-15 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT1G12270 77 / 5e-15 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G62740 76 / 1e-14 Hop2 Hop2, stress-inducible protein, putative (.1) AT5G12430 72 / 2e-13 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G42580 72 / 2e-13 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT1G56440 71 / 3e-13 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018179 [exp] 715 / 0 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10028919 [exp] 92 / 4e-20 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 92 / 1e-19 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10032234 [exp] 85 / 1e-17 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 83 / 5e-17 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10009682 [exp] 82 / 1e-16 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10042001 [exp] 82 / 1e-16 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 82 / 2e-16 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10028154 [exp] 70 / 1e-12 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G177400 [exp] 411 / 2e-142 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G141800 [exp] 93 / 3e-20 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.003G113400 [exp] 90 / 2e-19 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.012G046900 [exp] 87 / 3e-18 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G119500 [exp] 86 / 7e-18 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.015G038600 [exp] 82 / 9e-17 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 81 / 3e-16 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.013G008400 [exp] 79 / 6e-16 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G014100 [exp] 75 / 2e-14 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G166300 [exp] 69 / 2e-12 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10025656 pacid=23144934 polypeptide=Lus10025656 locus=Lus10025656.g ID=Lus10025656.BGIv1.0 annot-version=v1.0 ATGACGAACTTGAAAACTGATTCTCCCCTCTCTCGCCGCGTCGTTCGAGCTTTCCTCGACTTCCTCGACTCCGTTGAGCCAGCTCCAGGAGTCGACGTCG AAGGACTGGAAGTGTCTCGTGAGTGTTTATCCGACGCGTTTAAGCTTGATCTCAATTCCGATGATGGTCCCGTTGAGCCTGGTCTTCTGGTCAACCTATT TCGCTCGATGGACTCGCATGATCGCCATCGTGCTGGTGCATCTCAGTCCAAAGCTCAGCAGGATGAGGATTGGACTAGACAGTCTGGTGGAACTGGGGTG TTTAATGATGAATTGTTTGGACAGTTCTTTGCTGCACTTGAGAAGCATCACTTCTTCAAGGCAACGGCTGACGGGAAGGACGATGCGATCCAACTGGACA AAGCGACACGGTTATTTCATGATGCTCTGAATGAGATGGAAAAGACTGGATGCCAATTGTTCGATACTGATACCCTTGCCGAGACATTGAAGTCACAAGG TAACAGGGCATTGCAGTCAAAGCGATACTATGATGCAATTGAGTTGTATTCTTGTGCCATTGCACTTAATGAAAAGAAAGCTGTTTATTACTGTAACAGG GCCGCTGCATATACTCAGGTGCAAACGTATGGTGAAGCAATCAGAGATTGTCTGAAGTCCATCGATATTGATCCTAATTACAGTAAGGCATACAGCCGTC TTGGATTAATCTATTATGCACTAGGGAACTACAGAGATGCCATCGATAAAGGATTCAAGAAAGCTTTGCAATTGGATCCTAGAAACGAGTCAATCATCGA GAACATTCGGGTTTCAGAGAAAAAACTGAAGGAAGAACAACCATGGACTCAGAACGCGAGCGAGAGTTCGACCGGCATTCCTCTGTTTGGTGGTTCAATG CCGTTCGACCCGTCTTCGATTCCCGCAAACTTCGCCAACATGATGCGAAACGTGGTGCAACCTGAACAAAGGCCAGGAGAAGCAAGCCGAGGAAATCCCC CTGATGAGCATCAGCCAGGAGTAGGAGCTGGAAACGTCAACGTGAACATAGGAGAAATGATGCCCGACGAACTTCGTGGGGTTCTTGGATCGGTGATGGG AATGTTCACCGGAGCTGCGCAGCCTCCCGCTTCCTCCGGTGGGAGTCAACCGTCGAATGGTAGACCACCAGCTAACTAG
AA sequence Show only first row Show all	>Lus10025656 pacid=23144934 polypeptide=Lus10025656 locus=Lus10025656.g ID=Lus10025656.BGIv1.0 annot-version=v1.0 MTNLKTDSPLSRRVVRAFLDFLDSVEPAPGVDVEGLEVSRECLSDAFKLDLNSDDGPVEPGLLVNLFRSMDSHDRHRAGASQSKAQQDEDWTRQSGGTGV FNDELFGQFFAALEKHHFFKATADGKDDAIQLDKATRLFHDALNEMEKTGCQLFDTDTLAETLKSQGNRALQSKRYYDAIELYSCAIALNEKKAVYYCNR AAAYTQVQTYGEAIRDCLKSIDIDPNYSKAYSRLGLIYYALGNYRDAIDKGFKKALQLDPRNESIIENIRVSEKKLKEEQPWTQNASESSTGIPLFGGSM PFDPSSIPANFANMMRNVVQPEQRPGEASRGNPPDEHQPGVGAGNVNVNIGEMMPDELRGVLGSVMGMFTGAAQPPASSGGSQPSNGRPPAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Lus10025656 [exp]	0	1
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	1.4	0.9766
					Lus10032742 [exp]	3.7	0.9625
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10007530 [exp]	6.9	0.9473
AT1G11320			unknown protein		Lus10017280 [exp]	8.1	0.9524
AT3G50845			Protein of unknown function (D...		Lus10026019 [exp]	8.5	0.9576
					Lus10011653 [exp]	8.7	0.9578
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	11.0	0.9599
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	12.7	0.9543
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10017775 [exp]	13.0	0.9578
AT1G15170			MATE efflux family protein (.1...		Lus10018134 [exp]	15.2	0.9563

Compare expression of checked genes

Lus10025656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.