Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77590 1043 / 0 LACS9 long chain acyl-CoA synthetase 9 (.1) AT2G04350 906 / 0 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT5G27600 367 / 5e-117 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 349 / 2e-110 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT4G23850 315 / 8e-98 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 313 / 3e-97 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 308 / 5e-95 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G49430 303 / 2e-93 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT1G64400 303 / 5e-93 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT3G23790 174 / 5e-46 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018178 [exp] 1361 / 0 AT1G77590 1076 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10029669 [exp] 1190 / 0 AT1G77590 1091 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10042707 [exp] 1180 / 0 AT1G77590 1082 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10016083 [exp] 906 / 0 AT2G04350 1057 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10012307 [exp] 894 / 0 AT2G04350 1054 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10016085 [exp] 473 / 8e-161 AT2G04350 548 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10010530 [exp] 358 / 2e-113 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 350 / 2e-110 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10029918 [exp] 347 / 3e-109 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G084100 [exp] 1106 / 0 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.005G177500 [exp] 1101 / 0 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169400 [exp] 898 / 0 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.014G169600 [exp] 759 / 0 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.013G021300 [exp] 358 / 9e-114 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 347 / 3e-109 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.001G091900 [exp] 322 / 3e-100 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.003G139700 [exp] 313 / 7e-97 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 306 / 1e-94 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 299 / 1e-91 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10025657 pacid=23145081 polypeptide=Lus10025657 locus=Lus10025657.g ID=Lus10025657.BGIv1.0 annot-version=v1.0 ATGACCCTGTACCTGATCATCGGAGCTATAGTCCCGCTGGTGGCGGCGACCCTCCTCCTGTTTAAGTGGAGCTCCAAGAAGAAACGCGGAGTTCCGATCG GGGTCGGAGGCCAATCTGGATACGCGATTCGGAACGCAGGTTTCCCGACGCCGCTCGAGACGGCGTGGGAAGGCGTATCCACTCTGGCGGAGCTGTTCGA GTACGCTTGCAAGAGGCACGGTGGGAAGAACCTGCTCGGGACGCGGAAGCTGGTCGCCAGAGAGGTTGAAGTTAGCGGAGATGGAAGGTCGTTCGAGAAG CTTCATTTGGGGGGATACCAGTGGCTGACTTACGCTGCTGTGTTCCAGAGAGTTTTGAATTTTGGGTCTGGGTTGGCGAAATTGGGGCACCAGAAGGACG AGCGTGTGGCCATCTTTGCTGATACCAGAGCTGAATGGTTCATTTCGTTGCAGAGTTGCTTTAGGCGTAATGTGACAGTGGTCACCATCTATGCTTCTTT GGGAGAGGAAGCTTTGTCCCACTCATTGAATGAGACTGAAGCAACGACTGTGATTTGCGGGAGCAAGGAACTGAAGAAACTCGTAGACATAAGCGAGCAA CTTAAGACAGTGAAGCGGTTAATATGTATGGATGATGATCTTCCTTCTGTTTCGTCTCCGTTGGAGTGGACGATCAAGTCCCTTGCCAGTGTGGAGAAAC TCGGTCAAGAAAATCCCACCGGAGCTGAATTACCCCTGCCAGCTGATGTTGCTGTCATTATGTATACAAGTGGGAGTACCGGGTTACCAAAGGGAGTAAT GATGACACATGCTAATGTCCTTGCTGTAGTTTCTGCAGTCAGGACCATTGTTCCTGGCCTCGAAAGCAATGATGTCTATCTCGCATATCTTCCGTTAGCT CATATTCTCGAAATAGCAGGCGAAAATATAATTGCTGGAGTTGGAAGTGCTATAGGATATGGCACTCCTCTGACACTCACTGACACTTCGAACAAGATAA AGAAAGGAACCAAGGGAGATGCTACTGAGTTGAGGCCAACTGTGATGGCAGCTGTTCCAGCAATTCTTGACCGCGTTCGAGATGGAGTGCGTAAGAAGGT AGATGCAAAAGGTGGATTTTCCAAGTGTCTATTTGACTTGGCATACAATCGCCGTTTGTCAGCAGTTAATGGTAGTTGGTTCGGAGCTTGGGGACTAGAA CTGCTTCTGTGGAACATTCTTGTTTTTAAGAAGGTTCGAGCAGTTTTAGGAGGTAGAGTGCGCTTTCTGCTTTCTGGTGGCGCTCCTCTTTCTGGGGATA CTCAAAGATTTATCAACATTTGCCTTGGGGCTCCGATCGGCCAAGGTTATGGTCTTACTGAGACTTGTGCTGGTGGGAGTTTCTCTGAGTTTGATGATAC ATCTGTTGGCCGAGTTGGAAATTCGCTCCCTTGCTCGTATATTAAGTTAGTAGATTGGCCAGAAGGTGGGTATTTGATCAGAGATTCGCCCATGCCTCGT GGAGAAATCGTCATCGGTGGCCCCAACGTCACTCTTGGATACTTTAAAAATGAAGAGAAATCAAGAGAAGTCTACAAGGTTGACGAGAAAGGCATGAGGT GGTTCTACACCGGTGATGTTGGCCAGTTTCATTCCGACGGATGCCTAGAGATAATCGATCGTAAAAAGGACATTGTCAAGCTTCAGCATGGGGAATACGT CTCTTTGGGAAAGGTCGAGGCTGCCCTTAGCGGTTGCCCGTACGTGGACAACCTCATGCTCCATGCCGATCCATTCCACAGTTACTGTGTGGCCGTAGTG GTCCCTTCGCAGCCCGCCTTGGAACAATGGGCAGCAAAGCAAGGAATCAGCTACGCAGATTTCTCCGATCTTTGTAACAAGAACGAAACCGTAAAGGAAG TCCAAGCTTCTCTTGCAAAGGAAGCAAAGAAGGCACGGTTGGAGAAGTTTGAGATCCCGGCAAAGATCAAACTGCTTTCGAATCCGTGGACACCCGAGTC TGGCCTGGTGACTGCAGCTCTGAAGATCAAGAGGGAAGCCATTAGGAAAGCCTTCTCTGAAGATCTATCTAAGATGTATGAATCTTGA
AA sequence Show only first row Show all	>Lus10025657 pacid=23145081 polypeptide=Lus10025657 locus=Lus10025657.g ID=Lus10025657.BGIv1.0 annot-version=v1.0 MTLYLIIGAIVPLVAATLLLFKWSSKKKRGVPIGVGGQSGYAIRNAGFPTPLETAWEGVSTLAELFEYACKRHGGKNLLGTRKLVAREVEVSGDGRSFEK LHLGGYQWLTYAAVFQRVLNFGSGLAKLGHQKDERVAIFADTRAEWFISLQSCFRRNVTVVTIYASLGEEALSHSLNETEATTVICGSKELKKLVDISEQ LKTVKRLICMDDDLPSVSSPLEWTIKSLASVEKLGQENPTGAELPLPADVAVIMYTSGSTGLPKGVMMTHANVLAVVSAVRTIVPGLESNDVYLAYLPLA HILEIAGENIIAGVGSAIGYGTPLTLTDTSNKIKKGTKGDATELRPTVMAAVPAILDRVRDGVRKKVDAKGGFSKCLFDLAYNRRLSAVNGSWFGAWGLE LLLWNILVFKKVRAVLGGRVRFLLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGGSFSEFDDTSVGRVGNSLPCSYIKLVDWPEGGYLIRDSPMPR GEIVIGGPNVTLGYFKNEEKSREVYKVDEKGMRWFYTGDVGQFHSDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSGCPYVDNLMLHADPFHSYCVAVV VPSQPALEQWAAKQGISYADFSDLCNKNETVKEVQASLAKEAKKARLEKFEIPAKIKLLSNPWTPESGLVTAALKIKREAIRKAFSEDLSKMYES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10025657 [exp]	0	1
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	2.0	0.8856
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	2.2	0.8920
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10013002 [exp]	4.9	0.8607
AT1G74030		ENO1	enolase 1 (.1)		Lus10027255 [exp]	5.7	0.8687
AT4G18593			dual specificity protein phosp...		Lus10018112 [exp]	5.7	0.8188
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	8.8	0.8456
AT4G16360			5'-AMP-activated protein kinas...		Lus10038783 [exp]	10.6	0.8385
AT4G21215			unknown protein		Lus10006757 [exp]	10.7	0.8341
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	14.7	0.8579
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	15.9	0.8418

Compare expression of checked genes

Lus10025657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.