Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21830 81 / 3e-18 unknown protein AT1G44608 47 / 3e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018177 [exp] 329 / 3e-114 AT1G21830 115 / 1e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083900 [exp] 147 / 1e-43 AT1G21830 145 / 1e-43 unknown protein Potri.005G177600 [exp] 133 / 2e-38 AT1G21830 132 / 8e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025658 pacid=23145119 polypeptide=Lus10025658 locus=Lus10025658.g ID=Lus10025658.BGIv1.0 annot-version=v1.0 ATGAACAACTACAAGGAAGAAACCAGTGATTCATACTGCTACTTCCACCCAAAGGAACCAGTGATCGGAGTCTGCCCACTCTGTTTACATGAACGCCTCT TGATCTTGCTAGCTGCAACTAACAAGCAACGCCGCCGTCAGTCTCATAAGCAACGCCGCCGCCATAACTATCTTTCATCTTCTTCTTCAAATTCGTCCTC TGCTGCTGCAAATTGTTCTTCTTCATCTCCACGGCACCATAAGAAGAAGCCGTCGATTCTGTTTTCTCTGGGCTCTCTGCTCATCAACCGGCTCGAGTTC AGACACCACCACCCCAAATCTTATGATGATGATGGTCATGATGATGAAAAAATCAACCCAGATTGTGGGTTTGATTATGGTGATAATTATGATGATGCCT CCACCAGCCTTGAAGACTCGTTCATTTCGATCCAGTTTCAAGACAACGGAAAGGCCTCGTGGGAAAAAGGTGTAGGATTGGTCGACTCGGACAAGAACAA TAGTGACAAGAAGATTGATCCTAGAAATGACACAAACAAGAAGAAGAAGTTGAATAGTAACATCCATTGTAACAAAGATCAAAACAAGAACACCATCAAA AGCATCCATCTTAAGGAGGATGAGATGAGTGTCGTTGAGCACGCGAAGCCACGCGGTGGCGGATCGCTGAGGTGGCGGAAGCGGATCGGCCAGATGTTCC ACCTCGTCCGATGGAAGAGGTCCAACAAGGCGAATACTTGCCACGTGGGATCCAAGGTGGAAGGGGTCATCAAGGTCAGGAGTAATAAAGGGTGGAATTT AAGGACTTTGAGCAAGAGAAGAAGTACTAGAGAATAA
AA sequence Show only first row Show all	>Lus10025658 pacid=23145119 polypeptide=Lus10025658 locus=Lus10025658.g ID=Lus10025658.BGIv1.0 annot-version=v1.0 MNNYKEETSDSYCYFHPKEPVIGVCPLCLHERLLILLAATNKQRRRQSHKQRRRHNYLSSSSSNSSSAAANCSSSSPRHHKKKPSILFSLGSLLINRLEF RHHHPKSYDDDGHDDEKINPDCGFDYGDNYDDASTSLEDSFISIQFQDNGKASWEKGVGLVDSDKNNSDKKIDPRNDTNKKKKLNSNIHCNKDQNKNTIK SIHLKEDEMSVVEHAKPRGGGSLRWRKRIGQMFHLVRWKRSNKANTCHVGSKVEGVIKVRSNKGWNLRTLSKRRSTRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21830			unknown protein		Lus10025658 [exp]	0	1
AT1G80630			RNI-like superfamily protein (...		Lus10024070 [exp]	4.0	0.7564
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10015301 [exp]	11.6	0.7274
AT3G52710			unknown protein		Lus10022708 [exp]	17.8	0.7101
AT3G26000			Ribonuclease inhibitor (.1)		Lus10037060 [exp]	20.5	0.6964
AT4G29350		PRF2, PFN2, PRO...	profilin 2 (.1)		Lus10012936 [exp]	26.2	0.7120
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	35.6	0.6976
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10041182 [exp]	41.2	0.6897
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10036577 [exp]	44.9	0.7063
AT3G01400			ARM repeat superfamily protein...		Lus10018685 [exp]	63.9	0.6947
AT1G63220			Calcium-dependent lipid-bindin...		Lus10029565 [exp]	64.0	0.6573

Compare expression of checked genes

Lus10025658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.