Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64420 801 / 0 DNA polymerase V family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041274 [exp] 1394 / 0 AT5G64420 1208 / 0.0 DNA polymerase V family (.1) Lus10037435 [exp] 729 / 0 AT5G64420 831 / 0.0 DNA polymerase V family (.1) Lus10018176 [exp] 546 / 5e-177 AT5G64420 351 / 3e-104 DNA polymerase V family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G079900 [exp] 1000 / 0 AT5G64420 958 / 0.0 DNA polymerase V family (.1) Potri.001G285600 [exp] 984 / 0 AT5G64420 952 / 0.0 DNA polymerase V family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04931 [flax] [poplar] DNA_pol_phi DNA polymerase phi
Representative CDS sequence Show only first row Show all	>Lus10025659 pacid=23145025 polypeptide=Lus10025659 locus=Lus10025659.g ID=Lus10025659.BGIv1.0 annot-version=v1.0 ATGGGGAGCAATAAGAGACATTGTAATTCAGTAGAGAAAGTGGAAGGTGACCTCGCCAATCCCATCAAGAAGAAGCTGAAGAAGGACAATAAGTCAAAGG GTATTGGTAATGTGGATGCTACTGCTGTTTCTGAAACCGATTCAGTCAAACCCATGGAAAGAAAGAAACTAAGGAAGAATTTGGACAAGGTGCGTCACCG CGGCCCGGAGAAGAGTGAACAAGAGAAGCCGAAACCAATGGATGTGGATTCCAAAGTTGATGAAACCAAGAGGGGACAAATGGTAGCTTCATCTAGTAAA GGAGTGCCTGCTTTCCACATTGACGTTTTCAAGGAGTTGGCATCTGCTGATGCTTCTGTAAGAGAAGCTGGTGTTCAAAGACTGGTAACCGAGTTGCACA AGGTTCAGAATGCTTATCAAGGCAATAAGGAGTTATATGAAAGTGGGTTGGAATTGGAAGCTGATAAAGATGATGGCTTGAATGATACTGCACCTTCCGT CAGATATGCTATTAGGAGACTTGTCCGTGGTGCTTCATCATCTAGGGAGTGTGCCAGACAAGGTTATGCATTGGGGTTGACTCTGTTGGTTTGCACAATC TCTTCCATCAAAGTTGAGTCCATGCTGAAATTAATTCTTGAGATGTTAGAAGTTTCTGCATCAATGAGGGGCCAGGAAGCAAAGGATTGTCTTTTAGGTA GATTATTTTCATACGGCGCTCTTGCTCGATCAGGAAGGTTGAATGAGTTGTGTATTTCAGATCCAAACACTCCAGTTATCAAGGAGTTTGTCAGTCTACT TCTTACTCTTTCCGCAAAGAAATCTTATTTGCCAGAGCCTGTTGTTACAGTTATCGTGGACTTGGCCGAGAAGTTGCAAGTGGAGCAGATATTGAACCAT GTACTCGAAGCTCCTGGACTTTCTGAGTGGTTTAGTGATGCTGTGGATGCTGGAAACCCGGATGCTTTACTTCTAGCTTTGAGACTTCGAGAGAAAGTTT CAGTTGATAGCTTAAAGTTTGGAAAAGTTCTGCCGTATCCATTCAGCCCTAGCAGCTTCTTTTCCTCTGAGCATTTGAACTTACTTAATAACTGCTGGAA GAACTCAACTTCCTGCCAGCCTCGAGTGCACAGCGTGTGGCCTGTTCTTGTAAACATGCTTTTGCCTGTAATGATTTCCGAAGCTGAGGATGTGGTGTCA GCATCTAATTCTCTGAAGAAGAACAAAAAAAGTAAGAAGTCTAGTTCGTCGGATGAAGAAATAGAAAAGAATGTCCAGAACTTCTGTGAAGTTATCCTTG AGGGTGCTCTTCTCCCTTCTTCCCATGATCGTAAGCATTTGGCGCTGGGTGTTTTGCTCCTCCTCCTTCCAAGACTGCCTGCATCCTTGGTACCTGTGGT TCTCTCTGACAAACTCGTGCAAGGCCTGATGGATATTCTTTCAACAAAAGATAGCTGGCTCTATAAAGTTGCACAGCATTTTATCAAAGAATTATCAGAC TGGGTTGGTAATGATGATGTCAGAAGGGTTGCTGTTATTGTTGCCTTACAGAAACACAGCAATGGGAAATTTGATTCCATAACAAAGACAAAAACAGTAA AAGCTTTGTTGGGCGAGTTCAAGACAGAATCTGGTTGCCTGTTATTCATCCAAAATTTGGTTAACTTGTTTGTTGATAAGAGCAATGCTTCGGATGAACC TTCAGACCAAAGCCAGACAACTGATGACAATTCAGAGATGGGAACGCTAGAGGATAAAGATTCTGGTGCATTGGGAAATTCTGACTCCTTGAAGAGTTGG ATTGTGGAATCATTGCCAAGTATTGTGAAATTTTTGAAGTTGGATCCTGAAGAAAAATTACATGTCCAAAAGGAAATCTTGAAGTTCCTAACCGTTCAAG GTTTGTTCTCTGCATCTCTTGGCTCTGAAGTCACGTCATTTGAACTTCAAGAGACATTTACGTGGCCAAAGGCAGCAACTTCAAGTGCTATCTGCAGAAT CTGCATTGAGCAAATCCAATCATTGCTGGCAAGTGCTCAAAAGATGGAGTTGTCTCCTGCTTTGCTGAATGGCTCCGAGGGTAGTGAGCTTGGGTCTTTC TTCATGCAGTTCCTTTCAACATTGCGTGGCATACCATCTGTTTCTCTATTCCGAATTTTGAATGATGAGGATGAGAAGGCATACCAAAAGTTACTAGTAA CAGAAGCTAGTCTTCATAAACAGGAAACAAAAGACATGTCTGAGAACGTTACTTACAAGTACCATGCACTGAGATACTTGATGATCCAGTTATTGCTCCA AGTGCTCCTTCATCCAGGAGAATTCACTGAACCGGTGTCTGAAATTATCATATGTTGCAAAAAAGCCTACAAACTTACTGACATTCCTGACCAGGAGGAA GATGAGTCTGATGGGGATATTGAGTGGATGGATGTTCTTGTGGACACATTGCTTTCACTACTGCCACAGTCATCTGCCCCTGTGCGGACCTCAATTGAGC AGGTATTCAAATGTTTCTCCTCCGATGTGACAATGGATGGATTACTTCAGATGCTGCGCATCATCAAGAGAGACTTGAAGCCATCTAGACACCAGGAAGC AGATAGTGAAAATGATGATGATGACGATGATCTTCTTGACATAGAAGAAGATGAAGCCGTAACTGGTGAAACGGGTGAGAGTGAAGAAGAAGATGATGAA ATCGATGAAGCCGTAACTGTTGAAGCAGATGGAGATTACAAAGAATCATCGCCTGAAGATTCTGATGATGAGTCTGATGAAGGAATGGATGATGATGCCA TGTTCAGGATGGACACATATCTCGCTCAGATTTTCAAAGAGAAAAAGAACCAGACTGGGAGTGAAACTGCTCAATCACAGCTTGTCTTGTTCAAGCTTCG TGTTCTTTCATTGCTCGAGATTTACCTACATACAAATCCAGGCAATCCTCATGTTATGACAGTCTACTCATACTTGGCCAAGGCATTCGTTAATCCACAG ACTAGAGAAGTCAGCGAGCAGTTAGGCCAACGAATATGGGGAATTCTGAACAAGAAAATATTGAAGGCAAAGGAGTTTCCAAAAGGAGCTGATGTGAACC ACTCAATGCTAGTATCGTTGCTGGAAAGAAATTTGAAGTTAGCATCAAGGCCATTTAAGAAGAAGAAATCTGCATCTGCTGCTGACCAATCCAACAAGAA AAAACAGGAAGCCGCCCAGAAACGACACAAGATAATTGCTTCTCTTTCTCAAGATTCGACCTTTTGGATTCTGAAGATAATCGATGCCAGCAAGTTCAGC GGGGAAGAACTCGAGAGCGTGTTTGGTTCCTTAAAGAACATGCTCACGGGGTTCTTTGACAGTAAAAAATGTCCGATAAAGTCTGGTTTTGTGAAAGAAC TGTTCAAGAGGAGACCGTGGATTGCACACCACCTGTTTGAGTTCCTTGTAGATAAATGCCGCAGCTCAAAGCTAGAGTATCGCCGAGTCGAAGCACTTGA TCTGGTTCTGGAGGTGTTGAAATTAATGGCTGGAAGGAAGAAGACATTGAAGAGCCGTATTGCGAAGCTGAGTGAGCTGGTGAAGGAGCTGGTGACGAAT ATGCCGGAGAAACAGTCGAGGCATGCCGATATTCGCAGGTTTTGTGGGAAAGTGTTTCAGATTATATCAGCCAACGACATGGCCAAGTCTTTTCTGAAAG AGTTGGATTCAGATGCCCAAAGCTCTTGTGAATTGCGCCTGGGTGAGCTTTTCCTCAACTTCAAGAATGGAGTTGCAAAATTTTGA
AA sequence Show only first row Show all	>Lus10025659 pacid=23145025 polypeptide=Lus10025659 locus=Lus10025659.g ID=Lus10025659.BGIv1.0 annot-version=v1.0 MGSNKRHCNSVEKVEGDLANPIKKKLKKDNKSKGIGNVDATAVSETDSVKPMERKKLRKNLDKVRHRGPEKSEQEKPKPMDVDSKVDETKRGQMVASSSK GVPAFHIDVFKELASADASVREAGVQRLVTELHKVQNAYQGNKELYESGLELEADKDDGLNDTAPSVRYAIRRLVRGASSSRECARQGYALGLTLLVCTI SSIKVESMLKLILEMLEVSASMRGQEAKDCLLGRLFSYGALARSGRLNELCISDPNTPVIKEFVSLLLTLSAKKSYLPEPVVTVIVDLAEKLQVEQILNH VLEAPGLSEWFSDAVDAGNPDALLLALRLREKVSVDSLKFGKVLPYPFSPSSFFSSEHLNLLNNCWKNSTSCQPRVHSVWPVLVNMLLPVMISEAEDVVS ASNSLKKNKKSKKSSSSDEEIEKNVQNFCEVILEGALLPSSHDRKHLALGVLLLLLPRLPASLVPVVLSDKLVQGLMDILSTKDSWLYKVAQHFIKELSD WVGNDDVRRVAVIVALQKHSNGKFDSITKTKTVKALLGEFKTESGCLLFIQNLVNLFVDKSNASDEPSDQSQTTDDNSEMGTLEDKDSGALGNSDSLKSW IVESLPSIVKFLKLDPEEKLHVQKEILKFLTVQGLFSASLGSEVTSFELQETFTWPKAATSSAICRICIEQIQSLLASAQKMELSPALLNGSEGSELGSF FMQFLSTLRGIPSVSLFRILNDEDEKAYQKLLVTEASLHKQETKDMSENVTYKYHALRYLMIQLLLQVLLHPGEFTEPVSEIIICCKKAYKLTDIPDQEE DESDGDIEWMDVLVDTLLSLLPQSSAPVRTSIEQVFKCFSSDVTMDGLLQMLRIIKRDLKPSRHQEADSENDDDDDDLLDIEEDEAVTGETGESEEEDDE IDEAVTVEADGDYKESSPEDSDDESDEGMDDDAMFRMDTYLAQIFKEKKNQTGSETAQSQLVLFKLRVLSLLEIYLHTNPGNPHVMTVYSYLAKAFVNPQ TREVSEQLGQRIWGILNKKILKAKEFPKGADVNHSMLVSLLERNLKLASRPFKKKKSASAADQSNKKKQEAAQKRHKIIASLSQDSTFWILKIIDASKFS GEELESVFGSLKNMLTGFFDSKKCPIKSGFVKELFKRRPWIAHHLFEFLVDKCRSSKLEYRRVEALDLVLEVLKLMAGRKKTLKSRIAKLSELVKELVTN MPEKQSRHADIRRFCGKVFQIISANDMAKSFLKELDSDAQSSCELRLGELFLNFKNGVAKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64420			DNA polymerase V family (.1)		Lus10025659 [exp]	0	1
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	4.2	0.9270
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	7.1	0.9237
AT4G30150			unknown protein		Lus10007572 [exp]	7.3	0.9190
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10020369 [exp]	11.2	0.8997
AT4G30150			unknown protein		Lus10012174 [exp]	11.4	0.9088
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001742 [exp]	14.1	0.9163
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10034066 [exp]	16.7	0.8984
AT2G04865			Aminotransferase-like, plant m...		Lus10001163 [exp]	18.3	0.8661
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	18.7	0.8908
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	20.0	0.9034

Compare expression of checked genes

Lus10025659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.