Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02360 139 / 9e-40 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02340 138 / 3e-39 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02240 138 / 5e-39 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT5G24560 134 / 5e-38 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02230 135 / 9e-38 ATPP2-B1 phloem protein 2-B1 (.1) AT1G09155 134 / 1e-37 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02250 126 / 2e-34 ATPP2-B2 phloem protein 2-B2 (.1) AT1G80110 118 / 5e-32 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02320 112 / 4e-29 ATPP2-B7 phloem protein 2-B7 (.1) AT1G56250 110 / 1e-28 ATPP2-B14 phloem protein 2-B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025661 [exp] 147 / 1e-42 AT2G02340 109 / 7e-28 phloem protein 2-B8 (.1) Lus10025666 [exp] 147 / 4e-42 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10018171 [exp] 142 / 3e-40 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10020674 [exp] 140 / 6e-40 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10042712 [exp] 136 / 9e-39 AT2G02230 179 / 6e-55 phloem protein 2-B1 (.1) Lus10042713 [exp] 134 / 3e-37 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10029872 [exp] 131 / 1e-36 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10029674 [exp] 131 / 3e-36 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10008898 [exp] 125 / 2e-34 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022000 [exp] 149 / 2e-43 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.018G015800 [exp] 148 / 5e-43 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 147 / 1e-42 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G266900 [exp] 143 / 5e-41 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 142 / 1e-40 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.013G012600 [exp] 132 / 4e-37 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.018G016100 [exp] 130 / 4e-36 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 128 / 2e-35 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.015G138600 [exp] 98 / 7e-24 AT5G52120 356 / 3e-124 phloem protein 2-A14 (.1) Potri.006G117600 [exp] 96 / 2e-23 AT3G53000 486 / 2e-175 phloem protein 2-A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10025660 pacid=23145044 polypeptide=Lus10025660 locus=Lus10025660.g ID=Lus10025660.BGIv1.0 annot-version=v1.0 ATGGACGAATTGCCAGAAGAATGCATTGTGAAGGTGCTGTCGTACCTTGGACCTCAGCAGTCCTGCAACTTAGCAACCCTCTCGAGAAGCTTCGGCTCAG CTTCGCAATCGGAAGTCCTATGGGAACCCTTCCTTCCGACCAATTACCGACCAGTCATCTCCCAATCATCCGAACCTTCTCTTCTCGCCGGTTCGGTCTC CAAGAAGGAGCTCTTCCGCATTCTATGTCAACGTCCGATTCTAATGGACCAGGGCAAAAAGAGTTGGATGTTGGAGAAACAGAGTGGGAAGATAACGATG ATGTTGAGAGCCAAAGACCTTTTCATTGTTTGGATGGACGATGAATATCAGTTTTGGCAGTGGGAAATGGACCCTAATTGTAGGTTCGGGGTGCAAGAAG TGGCGGTGCTCGACTTAGTATGGTGGTTGGAGATTCGGGGCAAGGTAAGGACGAGAATGCTGTCACCAGGGACGTCGTACGGGGCCTACTTGGTGTACAA GTTCAAGGAGGACTTCTATTTTTTCGATGAAGAGACGGTGAAAGTAGGAGTCGTTGGAGTTGGGGAAGCTGAAGAAGTGAAGTTGGCGGAGGAAACAGTT GGGAGGCCACGAAGAGAAATGCTCCGAGGGAAAACTCGCTACAGAGGTGAGACAGAGTGGCGTAGGGTGAAACTTGGAGAGTTCAAGAACGAGGAAGAAG AAGACGATGAAGTTGAGTTCTTTGTCATGGAAGTTGAGAAAGGTCTCGACAAGGGCGGTCTTGTTGTCCATGGCATCGAAATTGTGCCTCTAAACTAG
AA sequence Show only first row Show all	>Lus10025660 pacid=23145044 polypeptide=Lus10025660 locus=Lus10025660.g ID=Lus10025660.BGIv1.0 annot-version=v1.0 MDELPEECIVKVLSYLGPQQSCNLATLSRSFGSASQSEVLWEPFLPTNYRPVISQSSEPSLLAGSVSKKELFRILCQRPILMDQGKKSWMLEKQSGKITM MLRAKDLFIVWMDDEYQFWQWEMDPNCRFGVQEVAVLDLVWWLEIRGKVRTRMLSPGTSYGAYLVYKFKEDFYFFDEETVKVGVVGVGEAEEVKLAEETV GRPRREMLRGKTRYRGETEWRRVKLGEFKNEEEEDDEVEFFVMEVEKGLDKGGLVVHGIEIVPLN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10025660 [exp]	0	1
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	7.6	0.9102
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	10.8	0.9099
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	13.2	0.9099
AT3G50150			Plant protein of unknown funct...		Lus10005799 [exp]	15.2	0.9099
					Lus10028570 [exp]	17.0	0.9099
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030693 [exp]	18.7	0.9099
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10032129 [exp]	20.1	0.9099
AT1G31885		NIP3;1	NOD26-like intrinsic protein 3...		Lus10033447 [exp]	21.5	0.9099
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10033879 [exp]	22.8	0.9099
AT2G02850		ARPN	plantacyanin (.1)		Lus10041848 [exp]	24.0	0.8196

Compare expression of checked genes

Lus10025660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.