Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02340 108 / 1e-27 ATPP2-B8 phloem protein 2-B8 (.1) AT1G09155 104 / 3e-26 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02240 104 / 4e-26 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT5G24560 99 / 2e-24 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02250 99 / 5e-24 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02310 99 / 8e-24 ATPP2-B6 phloem protein 2-B6 (.1) AT1G56250 92 / 1e-21 ATPP2-B14 phloem protein 2-B14 (.1) AT2G02230 93 / 2e-21 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02360 91 / 2e-21 ATPP2-B10 phloem protein 2-B10 (.1) AT1G56240 91 / 4e-21 ATPP2-B13 phloem protein 2-B13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018173 [exp] 260 / 6e-88 AT1G56240 51 / 7e-08 phloem protein 2-B13 (.1) Lus10018175 [exp] 155 / 6e-48 AT2G02340 75 / 2e-17 phloem protein 2-B8 (.1) Lus10025660 [exp] 151 / 2e-44 AT2G02360 183 / 9e-57 phloem protein 2-B10 (.1) Lus10042712 [exp] 133 / 4e-37 AT2G02230 179 / 6e-55 phloem protein 2-B1 (.1) Lus10029673 [exp] 129 / 1e-35 AT2G02230 180 / 4e-55 phloem protein 2-B1 (.1) Lus10018171 [exp] 128 / 1e-34 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10025666 [exp] 127 / 2e-34 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10008898 [exp] 119 / 1e-31 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10023207 [exp] 118 / 3e-31 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267000 [exp] 136 / 6e-38 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 120 / 4e-32 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 118 / 3e-31 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.018G016000 [exp] 114 / 8e-30 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.005G022000 [exp] 104 / 2e-26 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.006G266900 [exp] 103 / 9e-26 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.013G012600 [exp] 94 / 2e-22 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.001G050100 [exp] 94 / 3e-22 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.015G138600 [exp] 76 / 1e-15 AT5G52120 356 / 3e-124 phloem protein 2-A14 (.1) Potri.001G109800 [exp] 74 / 5e-15 AT1G12710 408 / 1e-144 phloem protein 2-A12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025661 pacid=23144951 polypeptide=Lus10025661 locus=Lus10025661.g ID=Lus10025661.BGIv1.0 annot-version=v1.0 ATGGATAGATTGCCAGAGGAATGCGTGGAAAAGCTGATGTCGTACGTCGGACCTCTGCAGACCTGCAGGCTGGCTGTCCTCTCGAAATCGTTATGGTCAG CTTCGCAATCGGAGCAACTCTGGGAAAGCTTCCTTCCGGAGGACTGGGAATCGGTGATCTCCCAGACGACATCTCTCAATATTCTTCAGATCTCCGACCG TCGACAGCTCGTCCGCCGGCTCTGCAAACGCCCACTCCTAATCGACGAGGGCAAAAAGAGTTGGATGGTGGATAAACGAACAGGGAAAATAACAATAATG CTGGGGCGCAAAGATCTGCGAATGTCGGGTGGCTGGGACCTGAAGAGCGACCAGGATTGTTGGTTCGGTCCCTCGGTACAGATGCTAAAACTCGGTTTGT CGTTCACAATTTGCGGAGAGATCCATACCGGAATGCTGTCTCCGAGCACATTGTACGCGGCTTACTTGGTGTTCAAGTTGGAGAAGGGGAAGCCCGGTTC GAATCCTCAATCCATTCAACTCAAGGCGCGACTCGTGAATCATGGAGGTGGTGGTTCGGGAAAAGAAGCACGCGATGAGCGAGAACTGAAGCTGGGGCGC AATTGGTGTCGGAGGTGGGAGCACTCGGGCGTGGGTTTGGCCCTGTTCTGGGGCATGTACCGAAACCCGACTAAGAAGTCGGAGACGGAGTGGTGGGAGG AGATGAGAGGAAAATGGTGGCTCGAGGCGAAACTCGGAGAGTTTCACAGTCACGCGAGAGAAGAAGACGGTGAGGACGGTGACGAATTAGTCGATATTTC GGTAATCAGTTCTGTGTTACATACGGATGTTAAAGTTTATGGCATAGAACTTAGACCTAGTTATTAA
AA sequence Show only first row Show all	>Lus10025661 pacid=23144951 polypeptide=Lus10025661 locus=Lus10025661.g ID=Lus10025661.BGIv1.0 annot-version=v1.0 MDRLPEECVEKLMSYVGPLQTCRLAVLSKSLWSASQSEQLWESFLPEDWESVISQTTSLNILQISDRRQLVRRLCKRPLLIDEGKKSWMVDKRTGKITIM LGRKDLRMSGGWDLKSDQDCWFGPSVQMLKLGLSFTICGEIHTGMLSPSTLYAAYLVFKLEKGKPGSNPQSIQLKARLVNHGGGGSGKEARDERELKLGR NWCRRWEHSGVGLALFWGMYRNPTKKSETEWWEEMRGKWWLEAKLGEFHSHAREEDGEDGDELVDISVISSVLHTDVKVYGIELRPSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10025661 [exp]	0	1

Compare expression of checked genes

Lus10025661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.