Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47578 346 / 6e-120 Biotin/lipoate A/B protein ligase family (.1) AT4G31050 345 / 1e-119 Biotin/lipoate A/B protein ligase family (.1) AT1G04640 126 / 1e-34 LIP2 lipoyltransferase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031225 [exp] 137 / 9e-39 AT1G04640 358 / 1e-126 lipoyltransferase 2 (.1.2) Lus10031801 [exp] 135 / 5e-38 AT1G04640 355 / 2e-125 lipoyltransferase 2 (.1.2) Lus10008181 [exp] 132 / 1e-37 AT4G31050 107 / 1e-28 Biotin/lipoate A/B protein ligase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G131000 [exp] 353 / 1e-122 AT1G47578 360 / 6e-126 Biotin/lipoate A/B protein ligase family (.1) Potri.001G014000 [exp] 129 / 9e-36 AT1G04640 388 / 2e-138 lipoyltransferase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF03099 [flax] [poplar] BPL_LplA_LipB Biotin/lipoate A/B protein ligase family
Representative CDS sequence Show only first row Show all	>Lus10025664 pacid=23145126 polypeptide=Lus10025664 locus=Lus10025664.g ID=Lus10025664.BGIv1.0 annot-version=v1.0 ATGCATTCTCATTCTGAACTTGCGAAGGATCTCTGCTGCAGCGGCGGTCTTCTTCCCCTCCTCCGGCGGATTTCGTCGTCTTCCGGCGGTGCGGCGGCTT CTTGGCTGTTTCAATTTCGGAAAAGGTTGGTTGAGCTCGTAGCTTCGTCACTTGTAATTTTGATTACTGCGAAGGATTGCCACCTTGCCGCCGATCAAGC TAACGGACATCCCGTCACCGCTCACCGGATGCCCCTTCTTCAGTGTGAGTTGTACGACTTGCATAAGGAGATAGTACCATACAAAGAAGCTTGGGACTGG CAAAAGGCCATTGTTGCAGAGAAGAAGGCTTTGGTGGATACCAATCAGGATTGCTCTGATACATTGATTGTCCTGCAGCATCGCCCTGTTTATACATTAG GCACGGGCAGCTCCGTTGAGCACCTTAATTTTTACATAAAGGATGCTCCTTTCGACGTGTATCGAACCGAGCGAGGCGGGGAAGTCACTTATCATGGACC TGGACAGTTAGTTATGTACCCAATTGTCAATCTCCGGAACCACAAGACGGATCTTCATTGGTACTTAAGGGCACTCGAGGAGGTGATTCTTCGTGTTCTT TCAACGGCGTTTGATATCAAGGCTTCTCGAGTCGAGGGTTTGACTGGAGTGTGGTTTGGCGACCGCAAACTGGCTGCAGTAGGGGTGAAAGTGTCGCGGT GGATAACGTACCATGGAATTGCCCTGAATGTGACTACGGATTTAACGCCTTTTGATTGGATAGTGCCATGCGGGATCAAGAACAGGAAGGTTGGCAGCAT CAAATCCCTGCTAGGTGACCTAGATGATGCTCAGATGATCAAAACTGCATACCAGTCATTAATCAAGGAGTTTTCTGAAGTTTTTGAGCTCAAAATCCAC CAAATAACAGCTCCACCCATATCCAGAGCTTTCGAGAAGAGCGAAAGCTTCCTTTCCAGCAGGTAG
AA sequence Show only first row Show all	>Lus10025664 pacid=23145126 polypeptide=Lus10025664 locus=Lus10025664.g ID=Lus10025664.BGIv1.0 annot-version=v1.0 MHSHSELAKDLCCSGGLLPLLRRISSSSGGAAASWLFQFRKRLVELVASSLVILITAKDCHLAADQANGHPVTAHRMPLLQCELYDLHKEIVPYKEAWDW QKAIVAEKKALVDTNQDCSDTLIVLQHRPVYTLGTGSSVEHLNFYIKDAPFDVYRTERGGEVTYHGPGQLVMYPIVNLRNHKTDLHWYLRALEEVILRVL STAFDIKASRVEGLTGVWFGDRKLAAVGVKVSRWITYHGIALNVTTDLTPFDWIVPCGIKNRKVGSIKSLLGDLDDAQMIKTAYQSLIKEFSEVFELKIH QITAPPISRAFEKSESFLSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10025664 [exp]	0	1
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	3.2	0.8290
AT2G25220			Protein kinase superfamily pro...		Lus10005345 [exp]	5.5	0.8122
AT4G33625			unknown protein		Lus10007070 [exp]	5.5	0.8168
AT4G35320			unknown protein		Lus10013844 [exp]	6.5	0.7995
AT5G20500			Glutaredoxin family protein (....		Lus10021590 [exp]	7.5	0.7983
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	8.9	0.8012
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10042356 [exp]	11.7	0.8050
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	14.0	0.7989
AT4G28760			Protein of unknown function (D...		Lus10011911 [exp]	18.0	0.7720
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10025747 [exp]	21.6	0.7815

Compare expression of checked genes

Lus10025664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.